wip remove root

reanahub · Sep 18, 2024 · 64226c5 · 64226c5
1 parent e877a64
commit 64226c5
Showing 1 changed file with 1 addition and 5 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -127,14 +127,10 @@ jobs:
         uses: reanahub/reana-github-actions/local-run@v1
         with:
           commands: |
-            # Install ROOT
-            wget https://root.cern/download/root_v6.32.04.Linux-ubuntu24.04-x86_64-gcc13.2.tar.gz
-            tar -xzvf root_v6.32.04.Linux-ubuntu24.04-x86_64-gcc13.2.tar.gz
-            source root/bin/thisroot.sh
             rm -rf snakemake-local-run && mkdir -p snakemake-local-run && cd snakemake-local-run
             pip install 'pulp<2.8' snakemake
             cp -a ../code .
-            snakemake -s ../workflow/snakemake/Snakefile --configfile ../workflow/snakemake/inputs.yaml -p --cores 1
+            snakemake --sdm apptainer -s ../workflow/snakemake/Snakefile --configfile ../workflow/snakemake/inputs.yaml -p --cores 1
             ls -l `pwd`/results/plot.png
             cd .. && rm -rf snakemake-local-run