feat: Add detail pages with Locations in the PathwayBrowser tree#27
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adamjohnwright wants to merge 6 commits intomainfrom
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feat: Add detail pages with Locations in the PathwayBrowser tree#27adamjohnwright wants to merge 6 commits intomainfrom
adamjohnwright wants to merge 6 commits intomainfrom
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Add /content/detail/:id route with a full detail page that includes: - Description tab (reusing PathwayBrowser's DescriptionTabComponent) - Locations in the PathwayBrowser section showing hierarchical tree of where an entity/event exists in Reactome's pathway hierarchy - Provider stubs for services required by the description tab - Animations support and PDBe Molstar for structure visualization Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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autofix.ci- Move LocationsTree into the description-tab as a proper section with
divider header and TOC entry ("Locations in the Pathway Browser")
- Add species filtering, expand/collapse all, tree connector lines,
type icons, and arrow expand icons matching site design language
- Add pathway-browser SVG icon assets to WebsiteAngular build config
so entity icons (protein, pathway, etc.) render correctly
- Clean up detail component to pass showLocations flag instead of
rendering LocationsTree standalone
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Provide DatePipe in DetailComponent to fix NullInjectorError that silently broke the authorship template rendering. Add Created as a separate row, fix @for tracking to use $index instead of dbId to avoid JSOG shared-reference conflicts, and unset the background override so detail pages match the standard page background. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
All search result types now have working detail pages: - Complex, Set, Pathway, and DNA Sequence use the existing detail page - Interactor results navigate to a new interactor detail page with summary info, synonyms, and interaction partners with Reactome entities - Icon results navigate to a new icon detail page with SVG preview, credits, references, and associated physical entities - Search links are now type-aware, routing each type to its correct page Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Extract diagramFromData() from DiagramService for reuse, create ReactionDiagramComponent that fetches reaction layout JSON and renders it client-side via Cytoscape. Integrate as a new section in DescriptionTabComponent for reaction-type entities. Fixes: handle missing endShape on INPUT connectors, missing centre on PTM attachment shapes, and bidirectional arm segment traversal for reaction diagrams from the ReactionExporter. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Use route-relative navigation (navigateTo) instead of router.navigate across all PathwayBrowser components to ensure URLs stay under the /PathwayBrowser/ prefix in the umbrella app. Add missing MatTreeNodeToggle and MatTreeNodeOutlet imports to event-hierarchy component so tree expand/collapse and child rendering work correctly. Fix _ignore flag getting stuck and preserve expansion state across data source resets. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Add /content/detail/:id route with a full detail page that includes: