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A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

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movement_validation

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Images: C. elegans by Bob Goldstein, UNC Chapel Hill http://bio.unc.edu/people/faculty/goldstein/ Freely licensed. Contour credit: MRC Schafer Lab. Simulated worm: OpenWorm.

movement_validation is a Python port of the Schafer Lab's Worm Tracker 2 analysis software.

It can be used to process videos of C. elegans into statistics so the behaviour of individual worms can be compared.

It is also the package used by the OpenWorm project to determine how closely its simulated worm behaves like real worms. It was started as a sub-project of the OpenWorm project.

It is only about 50% complete. Please see:

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A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

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  • Python 86.8%
  • MATLAB 13.2%