Introduction

A python code library package for spectra processing and analysis. Project is on-going development.

Features:

• read and apply processing on spectroscopy data
• robust plotting functions to plot spectral data
• prepare dataset and neural networks (UNet, LinearNet etc.)
• features packed training loop for model training

Disclaimer:

• This is a personal repo for personal use, but feel free to use it. Note that not all codes are validated.

Installation

If you want to be able to edit the code:

1. clone the repository:

!git clone https://github.com/rafsanlab/biospecml.git

2. edits any .py files needed in src folder.
3. pip install from the cloned path (here is the example in Colab):

!pip install '/content/biospecml'

If you want to use it directly:

install using pip:

!pip install git+https://github.com/rafsanlab/biospecml.git