v1.2.4.1

Speed optimzation
qzhang503 · May 1, 2023 · 8c8248d · 8c8248d
1 parent 9a8ecd1
commit 8c8248d
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/R/msmsmatches.R b/R/msmsmatches.R
@@ -1354,11 +1354,6 @@ matchMS <- function (out_path = "~/mzion/outs",
                    add_ms2moverzs = add_ms2moverzs, 
                    add_ms2ints = add_ms2ints,
                    digits = digits)
-
-    hadd_primatches(out_path = out_path, 
-                    add_ms2theos = add_ms2theos, add_ms2theos2 = add_ms2theos2, 
-                    add_ms2moverzs = add_ms2moverzs, add_ms2ints = add_ms2ints, 
-                    index_mgf_ms2 = index_mgf_ms2)
   }
 
   ## Peptide FDR 

diff --git a/R/scores.R b/R/scores.R
@@ -713,6 +713,11 @@ calc_pepscores <- function (topn_ms2ions = 100L, type_ms2ions = "by",
               n_cores = detect_cores(16L), 
               digits = digits)
 
+  hadd_primatches(out_path = out_path, 
+                  add_ms2theos = add_ms2theos, add_ms2theos2 = add_ms2theos2, 
+                  add_ms2moverzs = add_ms2moverzs, add_ms2ints = add_ms2ints, 
+                  index_mgf_ms2 = index_mgf_ms2)
+
   .savecall <- TRUE
 
   invisible(NULL)