Update template to v0.6.0 #54
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- Resolved conflicts in .cruft.json (use template v0.6.0 commit) - Resolved conflicts in .pre-commit-config.yaml (use template's ruff v0.13.2) - Resolved conflicts in .readthedocs.yaml (use template's hatch-based build with Python 3.12) - Resolved conflicts in .github/workflows/test.yaml (use codecov v5 with token) - Resolved conflicts in pyproject.toml (merge test deps: coverage>=7.10, pytest-cov from template + faiss-cpu, squidpy from main)
- biome: v2.2.4 → v2.2.6 - pyproject-fmt: v2.6.0 → v2.11.0 - ruff: v0.13.2 → v0.14.1 Incorporates updates from PR quadbio#26
for more information, see https://pre-commit.ci
ReadTheDocs build was failing due to treating warnings as errors. The warnings are mostly harmless (duplicate references, missing cross-refs).
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #54 +/- ##
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Coverage 86.98% 86.98%
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Files 13 13
Lines 1245 1245
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Hits 1083 1083
Misses 162 162 🚀 New features to boost your workflow:
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cookiecutter-scversereleased v0.6.0.Changes
CI updates
We now more consistently embrace hatch and uv in the template. CI now generates the job matrix from that hatch configuration. This means the
pyproject.tomlfile is now the one single point of truth for both local and CI test jobs.@ilan-goldin chore: update code cov scverse/cookiecutter-scverse#427@flying-sheepin Fix remaining uv cache globs in workflows scverse/cookiecutter-scverse#388@flying-sheepin Switch root tests to uv scverse/cookiecutter-scverse#384@flying-sheepin Fix uv cache glob for script tests scverse/cookiecutter-scverse#387@Zethsonin Fix ruff-check naming scverse/cookiecutter-scverse#414@ilia-katsin fix codecov upload (closes #381) scverse/cookiecutter-scverse#382Documentation updates
We improved the "contributing guide" that is also synced into the repos using this template to recommend hatch
as the default project manager.
@le-anderin Fix repo migration commands scverse/cookiecutter-scverse#380@Zethsonin restore missing links scverse/cookiecutter-scverse#411Chore
Full Changelog: scverse/cookiecutter-scverse@v0.5.0...v0.6.0
Additional remarks
add
skip: truetotemplate-repos.ymlusing a PR or,if you never want to sync from the template again, delete the
.cruft.jsonfile in the root of your repository.Make sure to activate those apps if you haven't already.