added USER cloning test

pydna-group · Feb 2, 2024 · f17e73e · f17e73e
1 parent 0350a93
commit f17e73e
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Showing 3 changed files with 11 additions and 7 deletions.
diff --git a/scripts/BioJSON-master/genbank_writer.py b/scripts/BioJSON-master/genbank_writer.py
@@ -6,6 +6,7 @@
 Copyright (c) 2011 Anselm Levskaya (http://anselmlevskaya.com)
 Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.  
 """
+
 import json
 from optparse import OptionParser
 

diff --git a/src/pydna/design.py b/src/pydna/design.py
@@ -684,14 +684,16 @@ def assembly_fragments(f, overlap=35, maxlink=40):
     f = [item for item in f if len(item)]
 
     return [
-        _pcr(
-            p.forward_primer,
-            p.reverse_primer,
-            p.template,
-            limit=min((p.forward_primer._fp, p.reverse_primer._fp)),
+        (
+            _pcr(
+                p.forward_primer,
+                p.reverse_primer,
+                p.template,
+                limit=min((p.forward_primer._fp, p.reverse_primer._fp)),
+            )
+            if hasattr(p, "template")
+            else p
         )
-        if hasattr(p, "template")
-        else p
         for p in f
     ]
 

diff --git a/tests/test_USERcloning.py b/tests/test_USERcloning.py
@@ -5,6 +5,7 @@
 from pydna.parsers import parse, parse_primers
 from pydna.amplify import pcr
 
+
 def test_USER_cloning():
 
     primers = """