[doc] and version to .24

DESCRIPTION

@@ -2,7 +2,7 @@ Package: SRMService
 Type: Package
 Title: Report Quantitative Mass Spectrometry Data
 Date: 2018-09-10
-Version: 0.1.9.23
+Version: 0.1.9.24
 Authors@R: c(person("Witold", "Wolski", email = "[email protected]", role = c("aut", "cre")),
                   person("Jonas", "Grossmann", email = "[email protected]", role = c("aut")),
                   person("Christian", "Panse", email = "[email protected]", role = c("aut")))
@@ -38,14 +38,23 @@ Imports:
     usethis,
     yaml
 Suggests:
-   missForest
+    missForest,
+    testthat,
+    ggplot2,
+    knitr,
+    readxl,
+    MSqRob
+Remotes:
+    protViz/quantable,
+    statOmics/MSqRob
 License: GPL
 LazyData: TRUE
 URL: https://github.com/protViz/SRMService
 BugReports: https://github.com/protViz/SRMService/issues
 Repository: CRAN
-RoxygenNote: 6.1.1
-Collate:
+RoxygenNote: 7.1.1
+VignetteBuilder: knitr
+Collate: 
     'A_dataset_docu.R'
     'RequiredColumns.R'
     'eb.fit.R'
@@ -64,14 +73,5 @@ Collate:
     'readMaxQuant.R'
     'transitionCorrelations.R'
     'zzz.R'
-Suggests:
-    testthat,
-    ggplot2,
-    knitr,
-    readxl,
-    MSqRob
-Remotes:
-    protViz/quantable,
-    protViz/bibliospec,
-    statOmics/MSqRob
-VignetteBuilder: knitr
+Depends: 
+    R (>= 2.10)

R/PrepareRmdAnalysisEnv.R

@@ -36,8 +36,8 @@ RMD_MQ_Quant_2GrpAnalysis <- function(workdir = getwd()){
   .scriptCopyHelperVec(c("/RunScripts/Run_MQ_QuantTwoGroupAnalysis.R",
                          "/doc/Grp2Analysis.Rmd",
                          "/doc/bibliography.bib",
-                         "/doc/Grp2Analysis_Empty.Rmd_t",
-                         "/doc/Grp2Analysis_MissingInOneCondition.Rmd_t"), workdir = workdir )
+                         "/doc/Grp2Analysis_MissingInOneCondition.Rmd",
+                         "/doc/Empty.Rmd"), workdir = workdir )
 }
 
 #' copies the RMD and Run files for 2 grp analysis based on a PD (protein discoverer) in your working directory.