Analysis for the scRNA-seq component of the uLIPSTIC project

Full details in our paper:

Universal recording of immune cell interactions in vivo

Sandra Nakandakari-Higa, Sarah Walker, Maria C. C. Canesso, Verena van der Heide, Aleksey Chudnovskiy, Johanne T. Jacobsen, Roham Parsa, Jana Bilanovic, S. Martina Parigi, Karol Fiedorczuk, Elaine Fuchs, Angelina M. Bilate, Giulia Pasqual, Daniel Mucida, Alice O. Kamphorst, Yuri Pritykin, Gabriel D. Victora

Nature 2024; doi

Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
supplementary_tables		supplementary_tables
README.md		README.md
finalized gut analysis (part 1).ipynb		finalized gut analysis (part 1).ipynb
finalized gut analysis (part 2).ipynb		finalized gut analysis (part 2).ipynb
finalized gut analysis (part 3).ipynb		finalized gut analysis (part 3).ipynb
finalized lcmv analysis (part 1).ipynb		finalized lcmv analysis (part 1).ipynb
finalized lcmv analysis (part 2: wt med ln).ipynb		finalized lcmv analysis (part 2: wt med ln).ipynb
finalized lcmv analysis (part 3: wt tissues).ipynb		finalized lcmv analysis (part 3: wt tissues).ipynb
helper_functions.py		helper_functions.py
qvalue_script.R		qvalue_script.R

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Analysis for the scRNA-seq component of the uLIPSTIC project

Universal recording of immune cell interactions in vivo

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Analysis for the scRNA-seq component of the uLIPSTIC project

Universal recording of immune cell interactions in vivo

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