Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Mechanism for activation of OR6A/B/P/Y receptors by aldehydes. #390

Closed
wants to merge 1 commit into from

Conversation

primaryodors
Copy link
Owner

Operating under the hypothesis that the active motion of TMR6 brings Arg6.57 into contact with Asp5.39, freeing Lys4.60 for ligand binding.

Require ability to reconnect broken strands before proceeding.

@primaryodors primaryodors added the on hold Waiting for something else to be working first. label Nov 23, 2023
@primaryodors
Copy link
Owner Author

This is dependent on #391.

@primaryodors
Copy link
Owner Author

Predictions are running on the server for octanal and decanal. If both ligands show up as agonists on this page: http://primaryodors.net/receptor.php?r=OR6A2 then this PR can be closed.

@primaryodors
Copy link
Owner Author

TODO: Check the best-binding pairs. It is assigning both aldehydes to Ser260 instead of Lys164.

@primaryodors primaryodors deleted the or6abpy-r6.57-mechanism branch February 10, 2024 02:25
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
on hold Waiting for something else to be working first.
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant