29-Dec-24

[ValWood]

No description provided.

[github-actions]

Changes added to the edit file this PR

Click to expand

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abnormal 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008349

Added

• abnormal 5'-nucleotidase activity label "abnormal 5'-nucleotidase activity"@en

• abnormal 5'-nucleotidase activity created_by "vw"

• abnormal 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• abnormal 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of 5'-nucleotidase activity is abnormal."

• abnormal 5'-nucleotidase activity creation_date "2024-12-29T15:58:10Z"^^dateTime

• Class: abnormal 5'-nucleotidase activity

• abnormal 5'-nucleotidase activity SubClassOf abnormal catalytic activity

abnormal protein localization during vegetative growth http://purl.obolibrary.org/obo/FYPO_0000443

Removed

• abnormal protein localization during vegetative growth EquivalentTo has part some
  (quality and (happens_during some single-celled organism vegetative growth phase) and (characteristic of part of some GO_0034613) and (has modifier some abnormal))

Added

• abnormal protein localization during vegetative growth EquivalentTo has part some
  (quality and (happens_during some single-celled organism vegetative growth phase) and (characteristic of part of some protein localization) and (has modifier some abnormal))

abolished AMP 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008351

Added

• abolished AMP 5'-nucleotidase activity creation_date "2024-12-29T16:04:42Z"^^dateTime

• abolished AMP 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of AMP 5'-nucleotidase activity is abolished."

• abolished AMP 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• abolished AMP 5'-nucleotidase activity created_by "vw"

• abolished AMP 5'-nucleotidase activity label "abolished AMP 5'-nucleotidase activity"@en

• Class: abolished AMP 5'-nucleotidase activity

• abolished AMP 5'-nucleotidase activity SubClassOf abnormal 5'-nucleotidase activity

abolished CMP 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008352

Added

• abolished CMP 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of CMP 5'-nucleotidase activity is abolished."

• abolished CMP 5'-nucleotidase activity creation_date "2024-12-29T16:05:55Z"^^dateTime

• abolished CMP 5'-nucleotidase activity label "abolished CMP 5'-nucleotidase activity"@en

• abolished CMP 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• abolished CMP 5'-nucleotidase activity created_by "vw"

• Class: abolished CMP 5'-nucleotidase activity

• abolished CMP 5'-nucleotidase activity SubClassOf abnormal 5'-nucleotidase activity

abolished GMP 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008350

Added

• abolished GMP 5'-nucleotidase activity created_by "vw"

• abolished GMP 5'-nucleotidase activity label "abolished GMP 5'-nucleotidase activity"@en

• abolished GMP 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of GMP 5'-nucleotidase activity is abolished."

• abolished GMP 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• abolished GMP 5'-nucleotidase activity creation_date "2024-12-29T16:02:25Z"^^dateTime

• Class: abolished GMP 5'-nucleotidase activity

• abolished GMP 5'-nucleotidase activity SubClassOf abnormal 5'-nucleotidase activity

abolished UMP 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008353

Added

• abolished UMP 5'-nucleotidase activity created_by "vw"

• abolished UMP 5'-nucleotidase activity label "abolished UMP 5'-nucleotidase activity"@en

• abolished UMP 5'-nucleotidase activity creation_date "2024-12-29T16:06:30Z"^^dateTime

• abolished UMP 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of UMP 5'-nucleotidase activity is abolished."

• abolished UMP 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• Class: abolished UMP 5'-nucleotidase activity

• abolished UMP 5'-nucleotidase activity SubClassOf abnormal 5'-nucleotidase activity

abolished tRNA cytidine N4-acetylation http://purl.obolibrary.org/obo/FYPO_0008345

Added

• abolished tRNA cytidine N4-acetylation label "abolished tRNA cytidine N4-acetylation"@en

• abolished tRNA cytidine N4-acetylation definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the posttranscriptional addition of acety groups to a cytosine N4 residue in a tRNA molecule is abolished."

• abolished tRNA cytidine N4-acetylation has_obo_namespace "fission_yeast_phenotype"

• abolished tRNA cytidine N4-acetylation created_by "vw"

• abolished tRNA cytidine N4-acetylation creation_date "2024-12-29T15:22:43Z"^^dateTime

• Class: abolished tRNA cytidine N4-acetylation

• abolished tRNA cytidine N4-acetylation SubClassOf abolished tRNA modification

abolished tRNA guanosine N2,N2-dimethylation http://purl.obolibrary.org/obo/FYPO_0003957

Removed

• abolished tRNA guanosine N2,N2-dimethylation SubClassOf abolished RNA modification

Added

• abolished tRNA guanosine N2,N2-dimethylation SubClassOf abolished tRNA modification

abolished tRNA modification http://purl.obolibrary.org/obo/FYPO_0008344

Added

• abolished tRNA modification definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which tRNA modification does not occur. All tRNA modification may be abolished, or one or more specific tRNA modifications may be selectively affected."

• abolished tRNA modification label "abolished tRNA modification"@en

• abolished tRNA modification created_by "vw"

• abolished tRNA modification has_obo_namespace "fission_yeast_phenotype"

• abolished tRNA modification creation_date "2024-12-29T15:18:03Z"^^dateTime

• Class: abolished tRNA modification

• abolished tRNA modification SubClassOf abolished RNA modification

abolished tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis http://purl.obolibrary.org/obo/FYPO_0003218

Removed

• abolished tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis SubClassOf abolished RNA modification

Added

• abolished tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis SubClassOf abolished tRNA modification

abolished tRNA wobble position uridine thiolation http://purl.obolibrary.org/obo/FYPO_0005177

Removed

• abolished tRNA wobble position uridine thiolation SubClassOf abolished RNA modification

Added

• abolished tRNA wobble position uridine thiolation SubClassOf abolished tRNA modification

abolished tRNA-Asp C38 methylation http://purl.obolibrary.org/obo/FYPO_0001768

Removed

• abolished tRNA-Asp C38 methylation SubClassOf abolished RNA modification

Added

• abolished tRNA-Asp C38 methylation SubClassOf abolished tRNA modification

decreased AMP 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008355

Added

• decreased AMP 5'-nucleotidase activity label "decreased AMP 5'-nucleotidase activity"@en

• decreased AMP 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• decreased AMP 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of AMP 5'-nucleotidase activity is decreased."

• decreased AMP 5'-nucleotidase activity created_by "vw"

• decreased AMP 5'-nucleotidase activity creation_date "2024-12-29T16:08:06Z"^^dateTime

• Class: decreased AMP 5'-nucleotidase activity

• decreased AMP 5'-nucleotidase activity SubClassOf abnormal 5'-nucleotidase activity

decreased CMP 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008356

Added

• decreased CMP 5'-nucleotidase activity created_by "vw"

• decreased CMP 5'-nucleotidase activity label "decreased CMP 5'-nucleotidase activity"@en

• decreased CMP 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of CMP 5'-nucleotidase activity is decreased."

• decreased CMP 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• decreased CMP 5'-nucleotidase activity creation_date "2024-12-29T16:08:50Z"^^dateTime

• Class: decreased CMP 5'-nucleotidase activity

• decreased CMP 5'-nucleotidase activity SubClassOf abnormal 5'-nucleotidase activity

decreased GMP 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008357

Added

• decreased GMP 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of GMP 5'-nucleotidase activity is decreased."

• decreased GMP 5'-nucleotidase activity created_by "vw"

• decreased GMP 5'-nucleotidase activity creation_date "2024-12-29T16:09:59Z"^^dateTime

• decreased GMP 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• decreased GMP 5'-nucleotidase activity label "decreased GMP 5'-nucleotidase activity"@en

• Class: decreased GMP 5'-nucleotidase activity

• decreased GMP 5'-nucleotidase activity SubClassOf abnormal 5'-nucleotidase activity

decreased UMP 5'-nucleotidase activity http://purl.obolibrary.org/obo/FYPO_0008354

Added

• decreased UMP 5'-nucleotidase activity creation_date "2024-12-29T16:07:10Z"^^dateTime

• decreased UMP 5'-nucleotidase activity label "decreased UMP 5'-nucleotidase activity"@en

• decreased UMP 5'-nucleotidase activity has_obo_namespace "fission_yeast_phenotype"

• decreased UMP 5'-nucleotidase activity definition "A molecular function phenotype in which the observed rate of UMP 5'-nucleotidase activity is decreased."

• decreased UMP 5'-nucleotidase activity created_by "vw"

• Class: decreased UMP 5'-nucleotidase activity

• decreased UMP 5'-nucleotidase activity SubClassOf abnormal 5'-nucleotidase activity

decreased mature tRNA level during vegetative growth http://purl.obolibrary.org/obo/FYPO_0002583

Removed

• decreased mature tRNA level during vegetative growth SubClassOf decreased RNA level during vegetative growth

Added

• decreased mature tRNA level during vegetative growth SubClassOf decreased pre-tRNA or mature level during vegetative growth

decreased pre-tRNA level during vegetative growth http://purl.obolibrary.org/obo/FYPO_0006748

Removed

• decreased pre-tRNA level during vegetative growth definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more transfer RNA precursor(s) (pre-tRNA) measured in a cell is lower than normal. Total pre-tRNA or a specific pre-tRNA may be affected."

  • database_cross_reference "PomBase:mah"

• decreased pre-tRNA level during vegetative growth SubClassOf decreased RNA level during vegetative growth

Added

• decreased pre-tRNA level during vegetative growth definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more precursor transfer RNAs (pre-tRNA) measured in a cell is lower than normal. pre-tRNA oncludes any unspliced or incompletely spliced tRNA. Total pre-tRNA or a specific pre-tRNA may be affected."

  • database_cross_reference "PomBase:vw"

• decreased pre-tRNA level during vegetative growth SubClassOf decreased pre-tRNA or mature level during vegetative growth

decreased pre-tRNA or mature level during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008342

Added

• decreased pre-tRNA or mature level during vegetative growth has_obo_namespace "fission_yeast_phenotype"

• decreased pre-tRNA or mature level during vegetative growth created_by "vw"

• decreased pre-tRNA or mature level during vegetative growth definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more transfer RNAs measured in a cell is lower than normal. Total tRNA or a specific tRNA may be affected."

• decreased pre-tRNA or mature level during vegetative growth label "decreased pre-tRNA or mature level during vegetative growth"@en

• decreased pre-tRNA or mature level during vegetative growth creation_date "2024-12-29T15:01:26Z"^^dateTime

• Class: decreased pre-tRNA or mature level during vegetative growth

• decreased pre-tRNA or mature level during vegetative growth SubClassOf decreased RNA level during vegetative growth

increased cellular potassium level http://purl.obolibrary.org/obo/FYPO_0008346

Added

• increased cellular potassium level label "increased cellular potassium level"@en

• increased cellular potassium level definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of potassium measured in a cell (total or free) is higher than normal."

• increased cellular potassium level has_obo_namespace "fission_yeast_phenotype"

• increased cellular potassium level created_by "vw"

• increased cellular potassium level creation_date "2024-12-29T15:27:56Z"^^dateTime

• Class: increased cellular potassium level

• increased cellular potassium level SubClassOf increased level of substance in cell during vegetative growth

increased cellular protein aggregate level http://purl.obolibrary.org/obo/FYPO_0004180

Added

• increased cellular protein aggregate level SubClassOf increased protein aggregate level

increased integrated stress response signaling http://purl.obolibrary.org/obo/FYPO_0008343

Added

• increased integrated stress response signaling label "increased integrated stress response signaling"@en

• increased integrated stress response signaling has_obo_namespace "fission_yeast_phenotype"

• increased integrated stress response signaling has_exact_synonym "increased GAAC signaling"

• increased integrated stress response signaling created_by "vw"

• increased integrated stress response signaling creation_date "2024-12-29T15:11:31Z"^^dateTime

• increased integrated stress response signaling definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which integrated stress response signaling is increased."

• Class: increased integrated stress response signaling

• increased integrated stress response signaling SubClassOf abnormal cellular process during vegetative growth

increased protein aggregate level http://purl.obolibrary.org/obo/FYPO_0008358

Added

• increased protein aggregate level has_obo_namespace "fission_yeast_phenotype"

• increased protein aggregate level creation_date "2024-12-29T16:13:24Z"^^dateTime

• increased protein aggregate level definition "A phenotype in which the amount of protein present as aggregates of misfolded protein is greater than normal."

• increased protein aggregate level label "increased protein aggregate level"@en

• increased protein aggregate level created_by "vw"

• Class: increased protein aggregate level

• increased protein aggregate level SubClassOf increased protein level

increased protein localization to pre-vacuolar endosome http://purl.obolibrary.org/obo/FYPO_0008348

Added

• increased protein localization to pre-vacuolar endosome creation_date "2024-12-29T15:47:38Z"^^dateTime

• increased protein localization to pre-vacuolar endosome definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to pre-vacuolar endosome is increased."

• increased protein localization to pre-vacuolar endosome label "increased protein localization to pre-vacuolar endosome"@en

• increased protein localization to pre-vacuolar endosome created_by "vw"

• increased protein localization to pre-vacuolar endosome has_obo_namespace "fission_yeast_phenotype"

• Class: increased protein localization to pre-vacuolar endosome

• increased protein localization to pre-vacuolar endosome SubClassOf abnormal protein localization during vegetative growth

increased protein localization to trans-Golgi network http://purl.obolibrary.org/obo/FYPO_0008347

Added

• increased protein localization to trans-Golgi network created_by "vw"

• increased protein localization to trans-Golgi network has_obo_namespace "fission_yeast_phenotype"

• increased protein localization to trans-Golgi network creation_date "2024-12-29T15:35:45Z"^^dateTime

• increased protein localization to trans-Golgi network label "increased protein localization to trans-Golgi network"@en

• increased protein localization to trans-Golgi network definition "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the trans-Golgi network is increased."

• Class: increased protein localization to trans-Golgi network

• increased protein localization to trans-Golgi network SubClassOf abnormal protein localization to Golgi apparatus

long mitotic spindle microtubules protruding beyond spindle pole body http://purl.obolibrary.org/obo/FYPO_0003787

Added

• long mitotic spindle microtubules protruding beyond spindle pole body has_related_synonym "long nuclear microtubules protruding through nuclear envelope"

potassium(1+) http://purl.obolibrary.org/obo/CHEBI_29103

Added

• potassium(1+) EquivalentTo has part some
  (increased concentration and (exists_during some single-celled organism vegetative growth phase) and (characteristic of some vegetative cell (sensu Fungi)) and (towards some potassium(1+)))

sensitive to amitrole http://purl.obolibrary.org/obo/FYPO_0001097

Added

• sensitive to amitrole has_exact_synonym "sensitive to 3-AT"

• sensitive to amitrole has_exact_synonym "sensitive to 3-aminotriazole"

Changes to ontology after reasoner runs

Click to expand

Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
WARN	missing_obsolete_label	DEPRECATED increased subtelomere-derived RNA level	rdfs:label	DEPRECATED increased subtelomere-derived RNA level
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf