closes #4584; closes #4583; closes #4582; closes #4581

[ValWood]

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Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abnormal asymmetric protein localization to old or new mitotic spindle pole body http://purl.obolibrary.org/obo/FYPO_0001874

Removed

• abnormal asymmetric protein localization to old or new mitotic spindle pole body label "abnormal asymmetric protein localization to old or new mitotic spindle pole body"

Added

• abnormal asymmetric protein localization to old or new mitotic spindle pole body has_exact_synonym "abnormal asymmetric protein localization to old or new mitotic spindle pole body"

• abnormal asymmetric protein localization to old or new mitotic spindle pole body label "abnormal asymmetric protein localization, with protein localized to both mitotic spindle pole bodies"

decreased asymmetric protein localization to old or new mitotic spindle pole body http://purl.obolibrary.org/obo/FYPO_0001875

Removed

• decreased asymmetric protein localization to old or new mitotic spindle pole body label "decreased asymmetric protein localization to old or new mitotic spindle pole body"

Added

• decreased asymmetric protein localization to old or new mitotic spindle pole body label "decreased asymmetric protein localization, with protein localized to both mitotic spindle pole bodies"

• decreased asymmetric protein localization to old or new mitotic spindle pole body has_exact_synonym "decreased asymmetric protein localization to old or new mitotic spindle pole body"

decreased asymmetric protein localization to old or new mitotic spindle pole body during anaphase, with protein symmetrically localized to both spindle pole bodies http://purl.obolibrary.org/obo/FYPO_0001876

Removed

• decreased asymmetric protein localization to old or new mitotic spindle pole body during anaphase, with protein symmetrically localized to both spindle pole bodies label "decreased asymmetric protein localization to old or new mitotic spindle pole body during anaphase, with protein symmetrically localized to both spindle pole bodies"

Added

• decreased asymmetric protein localization to old or new mitotic spindle pole body during anaphase, with protein symmetrically localized to both spindle pole bodies label "decreased asymmetric protein localization, with protein localized to both mitotic spindle pole bodies during anaphase"

• decreased asymmetric protein localization to old or new mitotic spindle pole body during anaphase, with protein symmetrically localized to both spindle pole bodies has_exact_synonym "decreased asymmetric protein localization to old or new mitotic spindle pole body during anaphase, with protein symmetrically localized to both spindle pole bodies"

decreased glutamate biosynthesis http://purl.obolibrary.org/obo/FYPO_0008274

Added

• decreased glutamate biosynthesis definition "A metabolism phenotype observed in the vegetative growth phase of the life cycle in which glutamate biosynthesis is abnormal."

  • database_cross_reference "PomBase:vw"

• decreased glutamate biosynthesis created_by "vw"

• decreased glutamate biosynthesis label "decreased glutamate biosynthesis"@en

• decreased glutamate biosynthesis has_obo_namespace "fission_yeast_phenotype"

• decreased glutamate biosynthesis creation_date "2024-07-22T14:07:46Z"^^dateTime

• Class: decreased glutamate biosynthesis

• decreased glutamate biosynthesis SubClassOf cellular metabolism phenotype during vegetative growth

increased H3-K56 acetylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008270

Added

• increased H3-K56 acetylation during vegetative growth created_by "vw"

• increased H3-K56 acetylation during vegetative growth label "increased H3-K56 acetylation during vegetative growth"@en

• increased H3-K56 acetylation during vegetative growth has_obo_namespace "fission_yeast_phenotype"

• increased H3-K56 acetylation during vegetative growth definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 56 of histone H3 occurs to a higher extent than normal."

  • database_cross_reference "PMID:20299449"

• increased H3-K56 acetylation during vegetative growth creation_date "2024-07-22T11:42:36Z"^^dateTime

• Class: increased H3-K56 acetylation during vegetative growth

• increased H3-K56 acetylation during vegetative growth SubClassOf increased histone acetylation during vegetative growth

increased histone H3-K14 acetylation at centromere during vegetative growth http://purl.obolibrary.org/obo/FYPO_0007307

Removed

• increased histone H3-K14 acetylation at centromere during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some regional_centromere) and (inheres_in some histone H3-K14 acetylation))

increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth http://purl.obolibrary.org/obo/FYPO_0006815

Removed

• increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some regional_centromere_inner_repeat_region) and (inheres_in some histone H3-K14 acetylation))

• increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth SubClassOf increased histone acetylation during vegetative growth

Added

• increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth SubClassOf increased histone H3-K14 acetylation during vegetative growth

increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth http://purl.obolibrary.org/obo/FYPO_0000966

Removed

• increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some regional_centromere_outer_repeat_region) and (inheres_in some histone H3-K14 acetylation))

increased histone H3-K14 acetylation at protein coding gene during vegetative growth http://purl.obolibrary.org/obo/FYPO_0005518

Removed

• increased histone H3-K14 acetylation at protein coding gene during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some protein_coding_gene) and (inheres_in some histone H3-K14 acetylation))

increased histone H3-K14 acetylation at rDNA during vegetative growth http://purl.obolibrary.org/obo/FYPO_0007634

Removed

• increased histone H3-K14 acetylation at rDNA during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some rRNA_gene) and (inheres_in some histone H3-K14 acetylation))

• increased histone H3-K14 acetylation at rDNA during vegetative growth SubClassOf increased histone acetylation during vegetative growth

Added

• increased histone H3-K14 acetylation at rDNA during vegetative growth SubClassOf increased histone H3-K14 acetylation during vegetative growth

increased histone H3-K14 acetylation at silent mating-type cassette during vegetative growth http://purl.obolibrary.org/obo/FYPO_0007633

Removed

• increased histone H3-K14 acetylation at silent mating-type cassette during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some silent_mating_type_cassette_array) and (inheres_in some histone H3-K14 acetylation))

increased histone H3-K14 acetylation at telomere during vegetative growth http://purl.obolibrary.org/obo/FYPO_0003802

Removed

• increased histone H3-K14 acetylation at telomere during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some telomere) and (inheres_in some histone H3-K14 acetylation))

increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth http://purl.obolibrary.org/obo/FYPO_0002369

Removed

• increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some regional_centromere_outer_repeat_region) and (inheres_in some histone H3-K56 acetylation))

• increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth SubClassOf increased histone acetylation during vegetative growth

Added

• increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth SubClassOf increased H3-K56 acetylation during vegetative growth

increased histone H4-K16 acetylation at centromere central core during vegetative growth http://purl.obolibrary.org/obo/FYPO_0004324

Removed

• increased histone H4-K16 acetylation at centromere central core during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some regional_centromere_central_core) and (inheres_in some histone H4-K16 acetylation))

• increased histone H4-K16 acetylation at centromere central core during vegetative growth SubClassOf increased histone acetylation during vegetative growth

Added

• increased histone H4-K16 acetylation at centromere central core during vegetative growth SubClassOf increased histone H4-K16 acetylation during vegetative growth

increased histone H4-K16 acetylation at telomere during vegetative growth http://purl.obolibrary.org/obo/FYPO_0005535

Removed

• increased histone H4-K16 acetylation at telomere during vegetative growth EquivalentTo has_part some
  (increased occurrence and (happens_during some single-celled organism vegetative growth phase) and (occurs_at some telomere) and (inheres_in some histone H4-K16 acetylation))

• increased histone H4-K16 acetylation at telomere during vegetative growth SubClassOf increased histone acetylation during vegetative growth

Added

• increased histone H4-K16 acetylation at telomere during vegetative growth SubClassOf increased histone H4-K16 acetylation during vegetative growth

increased histone H4-K16 acetylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0007632

Removed

• increased histone H4-K16 acetylation during vegetative growth EquivalentTo has_part some
  (increased occurrence and (inheres_in some
  (histone H4-K16 acetylation and (happens during some single-celled organism vegetative growth phase))))

increased histone H4-K5 acetylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0005309

Removed

• increased histone H4-K5 acetylation during vegetative growth EquivalentTo has_part some
  (increased occurrence and (inheres_in some
  (histone H4-K5 acetylation and (happens during some single-celled organism vegetative growth phase))))

increased histone H4-K8 acetylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0005308

Removed

• increased histone H4-K8 acetylation during vegetative growth EquivalentTo has_part some
  (increased occurrence and (inheres_in some
  (histone H4-K8 acetylation and (happens during some single-celled organism vegetative growth phase))))

normal histone H3 binding http://purl.obolibrary.org/obo/FYPO_0008272

Added

• normal histone H3 binding has_obo_namespace "fission_yeast_phenotype"

• normal histone H3 binding definition "A molecular function phenotype in which occurrence of histone H3 binding by a gene product (usually a protein) in a mutant is normal (i.e. indistinguishable from wild type). The affected gene product may be encoded by the mutated gene, or by a different gene."

  • comment "PomBase:pc"

• normal histone H3 binding label "normal histone H3 binding"@en

• normal histone H3 binding creation_date "2024-07-22T11:54:29Z"^^dateTime

• normal histone H3 binding created_by "vw"

• Class: normal histone H3 binding

• normal histone H3 binding SubClassOf normal histone binding

normal histone H4 binding http://purl.obolibrary.org/obo/FYPO_0008273

Added

• normal histone H4 binding label "normal histone H4 binding"@en

• normal histone H4 binding definition "A molecular function phenotype in which occurrence of histone H4 binding by a gene product (usually a protein) in a mutant is normal (i.e. indistinguishable from wild type). The affected gene product may be encoded by the mutated gene, or by a different gene."

  • comment "PomBase:pc"

• normal histone H4 binding creation_date "2024-07-22T11:55:31Z"^^dateTime

• normal histone H4 binding created_by "vw"

• normal histone H4 binding has_obo_namespace "fission_yeast_phenotype"

• Class: normal histone H4 binding

• normal histone H4 binding SubClassOf normal histone binding

normal histone binding http://purl.obolibrary.org/obo/FYPO_0008271

Added

• normal histone binding label "normal histone binding"@en

• normal histone binding created_by "vw"

• normal histone binding has_obo_namespace "fission_yeast_phenotype"

• normal histone binding definition "A molecular function phenotype in which the binding of a protein to a histone is normal (i.e. indistinguishable from wild type)."

  • database_cross_reference "PomBase:vw"

• normal histone binding creation_date "2024-07-22T11:51:17Z"^^dateTime

• Class: normal histone binding

• normal histone binding SubClassOf normal protein-protein interaction

Changes to ontology after reasoner runs

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Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf