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4 jul 2024 vw #4577

Merged
merged 2 commits into from
Jul 4, 2024
Merged

4 jul 2024 vw #4577

merged 2 commits into from
Jul 4, 2024

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ValWood
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@ValWood ValWood commented Jul 4, 2024

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github-actions bot commented Jul 4, 2024

Changes added to the edit file this PR

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Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
  • Version IRI: None
  • Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
  • Version IRI: None
  • Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abolished protein kinase activity in response to osmotic stress http://purl.obolibrary.org/obo/FYPO_0008263

Added

abolished protein kinase activity in response to oxidative stress http://purl.obolibrary.org/obo/FYPO_0008264

Added

abolished protein localization to chromatin at MCB promoters http://purl.obolibrary.org/obo/FYPO_0005460

Added

decreased LTR-derived RNA level http://purl.obolibrary.org/obo/FYPO_0008248

Added

decreased cellular mannosylinositol phosphorylceramide level http://purl.obolibrary.org/obo/FYPO_0008261

Added

decreased cellular phosphate (Pi) level http://purl.obolibrary.org/obo/FYPO_0008268

Added

decreased cenH-derived RNA level http://purl.obolibrary.org/obo/FYPO_0008251

Added

decreased histone H2B localization to chromatin at protein coding gene http://purl.obolibrary.org/obo/FYPO_0005223

Removed

Added

decreased histone H3-K4 acetylation at LTR during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008256

Added

decreased histone H3-K4 acetylation at protein coding gene during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008255

Added

decreased protein localization to cell surface http://purl.obolibrary.org/obo/FYPO_0008258

Added

decreased protein localization to cell surface with increased localization to endosomal structures http://purl.obolibrary.org/obo/FYPO_0008259

Added

decreased protein localization to cell surface, protein mislocalized to endoplasmic reticulum http://purl.obolibrary.org/obo/FYPO_0008260

Added

decreased protein localization to chromatin at protein coding gene http://purl.obolibrary.org/obo/FYPO_0008249

Added

decreased protein localization to pericentromeric region during meiosis I http://purl.obolibrary.org/obo/FYPO_0007993

Removed

Added

decreased subtelomeric heterochromatin RNA level http://purl.obolibrary.org/obo/FYPO_0008247

Added

decreased total cellular phosphate (Pi) level http://purl.obolibrary.org/obo/FYPO_0008269

Added

dihydrouridine absent from cell http://purl.obolibrary.org/obo/FYPO_0007934

Removed

Added

increased histone H3-K4 acetylation at LTR during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008257

Added

increased histone H3-K4 acetylation at protein coding gene during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008254

Added

mannosylinositol phosphorylceramide absent from cell http://purl.obolibrary.org/obo/FYPO_0008262

Added

normal LTR-derived RNA level http://purl.obolibrary.org/obo/FYPO_0008252

Added

normal cellular phosphate (Pi) level http://purl.obolibrary.org/obo/FYPO_0008266

Added

normal cenH-derived RNA level http://purl.obolibrary.org/obo/FYPO_0008246

Added

normal chromatin silencing at rDNA http://purl.obolibrary.org/obo/FYPO_0008265

Added

normal protein localization during vegetative growth http://purl.obolibrary.org/obo/FYPO_0000644

Removed

Added

normal protein localization to chromatin at gene promoter region http://purl.obolibrary.org/obo/FYPO_0008245

Added

normal protein localization to chromatin at protein coding gene http://purl.obolibrary.org/obo/FYPO_0008250

Added

normal subtelomeric heterochromatin RNA level http://purl.obolibrary.org/obo/FYPO_0005602

Removed

Added

normal telomere repeat region derived RNA level http://purl.obolibrary.org/obo/FYPO_0008253

Added

normal total cellular phosphate (Pi) level http://purl.obolibrary.org/obo/FYPO_0008267

Added

Changes to ontology after reasoner runs

Click to expand

Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf	

@ValWood ValWood merged commit ab65bd6 into master Jul 4, 2024
2 checks passed
@ValWood ValWood deleted the 4-Jul-2024-vw branch July 4, 2024 14:07
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