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Changes added to the edit file this PR

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Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abnormal chromatin silencing at centromere central core http://purl.obolibrary.org/obo/FYPO_0000640

Removed

• abnormal chromatin silencing at centromere central core SubClassOf abnormal regulation of transcription during vegetative growth

Added

• abnormal chromatin silencing at centromere central core SubClassOf abnormal gene expression

abnormal chromatin silencing at centromere outer repeat http://purl.obolibrary.org/obo/FYPO_0002346

Removed

• abnormal chromatin silencing at centromere outer repeat SubClassOf abnormal chromatin silencing at centromere

Added

• abnormal chromatin silencing at centromere outer repeat SubClassOf abnormal chromatin silencing at pericentromeric heterochromatin

abnormal chromatin silencing at pericentromeric heterochromatin http://purl.obolibrary.org/obo/FYPO_0008159

Added

• abnormal chromatin silencing at pericentromeric heterochromatin definition "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at the pericentromeric heterochromatin is abnormal. Chromatin silencing is the observed effect of processes that repress transcription in a region of the genome that is normally assembled into heterochromatin."

• abnormal chromatin silencing at pericentromeric heterochromatin creation_date "2024-01-25T09:55:14Z"^^dateTime

• abnormal chromatin silencing at pericentromeric heterochromatin label "abnormal chromatin silencing at pericentromeric heterochromatin"@en

• abnormal chromatin silencing at pericentromeric heterochromatin created_by "vw"

• Class: abnormal chromatin silencing at pericentromeric heterochromatin

• abnormal chromatin silencing at pericentromeric heterochromatin SubClassOf abnormal chromatin silencing at centromere

decreased chromatin silencing at pericentric heterochromatin http://purl.obolibrary.org/obo/FYPO_0008160

Added

• decreased chromatin silencing at pericentric heterochromatin creation_date "2024-01-25T09:56:50Z"^^dateTime

• decreased chromatin silencing at pericentric heterochromatin definition "A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at the pericentromeric heterochromatin is decreased."

• decreased chromatin silencing at pericentric heterochromatin created_by "vw"

• decreased chromatin silencing at pericentric heterochromatin label "decreased chromatin silencing at pericentric heterochromatin"@en

• Class: decreased chromatin silencing at pericentric heterochromatin

• decreased chromatin silencing at pericentric heterochromatin SubClassOf abnormal chromatin silencing at pericentromeric heterochromatin

increased activation of S-phase DNA damage checkpoint http://purl.obolibrary.org/obo/FYPO_0008156

Added

• increased activation of S-phase DNA damage checkpoint label "increased activation of S-phase DNA damage checkpoint"@en

• increased activation of S-phase DNA damage checkpoint creation_date "2024-01-25T09:34:57Z"^^dateTime

• increased activation of S-phase DNA damage checkpoint created_by "vw"

• increased activation of S-phase DNA damage checkpoint definition "A mitotic cell cycle checkpoint phenotype in which the S phase DNA damage checkpoint (also known as the intra-S phase DNA damage checkpoint) is activated at an increased leve compared to wild-type."

  • database_cross_reference "PMID:18344406"

• Class: increased activation of S-phase DNA damage checkpoint

• increased activation of S-phase DNA damage checkpoint SubClassOf abnormal S-phase DNA damage checkpoint

increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth http://purl.obolibrary.org/obo/FYPO_0002369

Removed

• increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth SubClassOf increased histone acetylation during vegetative growth

Added

• increased histone H3-K56 acetylation at centromere outer repeat during vegetative growth SubClassOf increased histone H3-K56 acetylation during vegetative growth

increased histone H3-K56 acetylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008158

Added

• increased histone H3-K56 acetylation during vegetative growth created_by "vw"

• increased histone H3-K56 acetylation during vegetative growth label "increased histone H3-K56 acetylation during vegetative growth"@en

• increased histone H3-K56 acetylation during vegetative growth creation_date "2024-01-25T09:40:29Z"^^dateTime

• increased histone H3-K56 acetylation during vegetative growth definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 56 of histone H3 occurs to a greater extent than normal."

  • database_cross_reference "PMID:18344406"

• Class: increased histone H3-K56 acetylation during vegetative growth

• increased histone H3-K56 acetylation during vegetative growth SubClassOf increased histone acetylation during vegetative growth

increased rDNA-derived RNA level http://purl.obolibrary.org/obo/FYPO_0008155

Added

• increased rDNA-derived RNA level creation_date "2024-01-25T09:30:47Z"^^dateTime

• increased rDNA-derived RNA level created_by "vw"

• increased rDNA-derived RNA level has_exact_synonym "increased rDNA RNA level"

• increased rDNA-derived RNA level label "increased rDNA-derived RNA level"@en

• increased rDNA-derived RNA level definition "A cell phenotype in which the amount of RNA derived from rDNA regions is higher than normal."

  • database_cross_reference "PMID:21211723"

• Class: increased rDNA-derived RNA level

• increased rDNA-derived RNA level SubClassOf increased RNA level during vegetative growth

normal chromatin silencing at centromere central core http://purl.obolibrary.org/obo/FYPO_0004331

Removed

• normal chromatin silencing at centromere central core SubClassOf normal chromatin silencing

Added

• normal chromatin silencing at centromere central core SubClassOf normal chromatin silencing at centromere

normal histone H4-K16 acetylation during vegetative growth http://purl.obolibrary.org/obo/FYPO_0008157

Added

• normal histone H4-K16 acetylation during vegetative growth label "normal histone H4-K16 acetylation during vegetative growth"@en

• normal histone H4-K16 acetylation during vegetative growth created_by "vw"

• normal histone H4-K16 acetylation during vegetative growth creation_date "2024-01-25T09:37:57Z"^^dateTime

• normal histone H4-K16 acetylation during vegetative growth definition "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 16 of histone H4 is normal (i.e. indistinguishable from wild type)."

  • definition "PMID:18344406"

• Class: normal histone H4-K16 acetylation during vegetative growth

• normal histone H4-K16 acetylation during vegetative growth SubClassOf normal histone acetylation during vegetative growth

Changes to ontology after reasoner runs

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Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth	definition	
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf