closes mutiple

[ValWood]

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[github-actions]

Changes added to the edit file this PR

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Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/fypo.owl
• Version IRI: None
• Loaded from: file:/__w/fypo/fypo/src/ontology/fypo-edit.owl

Ontology imports

Ontology annotations

abnormal mitochondrial genome maintenance http://purl.obolibrary.org/obo/FYPO_0000490

Removed

• abnormal mitochondrial genome maintenance has_exact_synonym "abnormal mitochondrial genome maintenance during vegetative growth"

  • database_cross_reference "PomBase:mah"

• abnormal mitochondrial genome maintenance has_related_synonym "abnormal mitochondrial genome maintenance during mitotic cell cycle"

  • database_cross_reference "PomBase:mah"

Added

• abnormal mitochondrial genome maintenance has_narrow_synonym "mitochondrial DNA depletion"

• abnormal mitochondrial genome maintenance has_narrow_synonym "loss of mitochondrial DNA"

decreased cell population growth during glucose starvation http://purl.obolibrary.org/obo/FYPO_0003743

Removed

• decreased cell population growth during glucose starvation EquivalentTo has part some
  (decreased cell population growth and (happens_during some cellular response to glucose starvation))

• decreased cell population growth during glucose starvation SubClassOf decreased cell population growth

Added

• decreased cell population growth during glucose starvation EquivalentTo has part some
  (decreased vegetative cell population growth and (happens_during some cellular response to glucose starvation))

• decreased cell population growth during glucose starvation SubClassOf decreased vegetative cell population growth

decreased vegetative cell population growth on low glucose http://purl.obolibrary.org/obo/FYPO_0008128

Removed

• decreased vegetative cell population growth on low glucose label "decreased vegetative population growth on low glucose"@en

Added

• decreased vegetative cell population growth on low glucose label "decreased vegetative cell population growth on low glucose"@en

normal stop codon readthrough http://purl.obolibrary.org/obo/FYPO_0008136

Added

• normal stop codon readthrough definition "A metabolism phenotype observed in the vegetative growth phase of the life cycle in which translational readthough of a stop codon is normal (i.e. indistinguishable from wild-type) during cytoplasmic translation."

  • database_cross_reference "PMID:37805140"

• normal stop codon readthrough created_by "vw"

• normal stop codon readthrough label "normal stop codon readthrough"@en

• normal stop codon readthrough creation_dat "2023-11-10T16:13:10Z"^^dateTime

• Class: normal stop codon readthrough

• normal stop codon readthrough SubClassOf normal cellular process

Changes to ontology after reasoner runs

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Coming soon

Errors reported

Level	Rule Name	Subject	Property	Value
WARN	missing_definition	output_of	definition	
WARN	missing_definition	preceded_by	definition	
WARN	missing_definition	precedes	definition	
INFO	lowercase_definition	has_output	definition	p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO	missing_superclass	phenotype	rdfs:subClassOf