‘closes (#4592)

src/ontology/fypo-edit.owl

@@ -78944,21 +78944,12 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0004573> "in
 EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0004573> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001162> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000032> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/CL_0000334>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002503> <http://purl.obolibrary.org/obo/SO_0001927>))))
 SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004573> <http://purl.obolibrary.org/obo/FYPO_0008146>)
 
-# Class: <http://purl.obolibrary.org/obo/FYPO_0004574> (increased subtelomere-derived RNA level)
-
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25398909") Annotation(oboInOwl:hasDbXref "PomBase:mah") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0004574> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any RNA transcribed from sub-telomeric regions measured in a cell is higher than normal.")
-AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0004574> "midori")
-AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_0004574> "2015-04-21T14:11:01Z")
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0004574> "increased subtelomere-derived RNA level during vegetative growth")
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:vw") oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0004574> "increased subtelomere-derived RNA transcript level")
-AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0004574> "fission_yeast_phenotype")
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:vw") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0004574> "accumulation of subtelomere-derived RNA transcripts")
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0004574> "increased subtelomere-derived RNA accumulation")
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PomBase:mah") oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0004574> "increased subtelomere-derived RNA level during mitotic cell cycle")
-AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0004574> "FYPO:0004574")
-AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0004574> "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term.")
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0004574> "increased subtelomere-derived RNA level")
-SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0004574> <http://purl.obolibrary.org/obo/FYPO_0000825>)
+# Class: <http://purl.obolibrary.org/obo/FYPO_0004574> (DEPRECATED increased subtelomere-derived RNA level)
+
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0004574> "Duplicate meaning")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0004574> "DEPRECATED increased subtelomere-derived RNA level")
+AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/FYPO_0004574> <http://purl.obolibrary.org/obo/FYPO_0005917>)
+AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/FYPO_0004574> "true"^^xsd:boolean)
 
 # Class: <http://purl.obolibrary.org/obo/FYPO_0004575> (increased histone H3-K9 acetylation at subtelomere during vegetative growth)
 
@@ -99178,7 +99169,9 @@ AnnotationAssertion(oboInOwl:creation_date <http://purl.obolibrary.org/obo/FYPO_
 AnnotationAssertion(oboInOwl:hasNarrowSynonym <http://purl.obolibrary.org/obo/FYPO_0005917> "increased transcription at subtelomere")
 AnnotationAssertion(oboInOwl:hasNarrowSynonym <http://purl.obolibrary.org/obo/FYPO_0005917> "increased transcription at subtelomeric heterochromatin during vegetative growth")
 AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0005917> "fission_yeast_phenotype")
+AnnotationAssertion(oboInOwl:hasRelatedSynonym <http://purl.obolibrary.org/obo/FYPO_0005917> "accumulation of subtelomere-derived RNA transcripts")
 AnnotationAssertion(oboInOwl:id <http://purl.obolibrary.org/obo/FYPO_0005917> "FYPO:0005917")
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0005917> "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0005917> "increased subtelomeric heterochromatin RNA level")
 EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0005917> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0002051> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000001> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000501> <http://purl.obolibrary.org/obo/SO_0001997>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0006351>))))
 SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0005917> <http://purl.obolibrary.org/obo/FYPO_0000825>)