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@kimrutherford @github-actions
kimrutherford authored and github-actions[bot] committed Dec 8, 2024
1 parent bacad9f commit 336be4e
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Showing 11 changed files with 16,843 additions and 16,816 deletions.
10,473 changes: 5,237 additions & 5,236 deletions data/alleles.tsv
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42 changes: 26 additions & 16 deletions data/chromosome1.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -1501,7 +1501,7 @@ FT /product="non-coding RNA, possible alternative UTR"
FT /obsolete_name="SPAC11D3.14c-antisense-1"
FT CDS complement(131319..135101)
FT /colour=7
FT /product="5-oxoprolinase (ATP-hydrolizing), Oxp2"
FT /product="5-oxoprolinase (ATP-hydrolyzing), Oxp2"
FT /systematic_id="SPAC11D3.14c"
FT /db_xref="SPD:39/39C08"
FT /controlled_curation="term=genome organization, divergent
Expand Down Expand Up @@ -1552,7 +1552,7 @@ FT /product="non-coding RNA"
FT /obsolete_name="SPAC11D3.15-antisense-1"
FT CDS 136331..140284
FT /colour=7
FT /product="5-oxoprolinase (ATP-hydrolizing), Oxp1"
FT /product="5-oxoprolinase (ATP-hydrolyzing), Oxp1"
FT /systematic_id="SPAC11D3.15"
FT /db_xref="SPD:48/48F05"
FT /controlled_curation="term=genome organization, divergent
Expand Down Expand Up @@ -4771,7 +4771,8 @@ FT /systematic_id="SPAC630.05"
FT /db_xref="PMID:21511999"
FT CDS complement(join(356233..356433,356511..356592,356635..356904,356984..356997))
FT /colour=10
FT /product="conserved eukaryotic protein"
FT /product="custos ortholog, conserved eukaryotic protein,
FT implicated in cell growth or cell division"
FT /systematic_id="SPAC630.06c"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
Expand Down Expand Up @@ -6687,7 +6688,7 @@ FT condition=FYECO:0000126; during=GO:0072690;
FT score=2.311820; db_xref=PMID:30566651"
FT CDS join(488779..489029,489074..489350)
FT /colour=7
FT /product="Protein co-chaperone with a zinc finger motif
FT /product="protein co-chaperone with a zinc finger motif
FT Zim17"
FT /systematic_id="SPAC24H6.02c"
FT /db_xref="SPD:06/06A11"
Expand Down Expand Up @@ -22104,6 +22105,8 @@ FT /controlled_curation="term=gene expression, RNA level;
FT annotation_extension=during(GO:0051321);
FT qualifier=increased; evidence=ECO:0000006;
FT db_xref=PMID:16303567; date=20100103"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20140820"
FT 3'UTR 1495078..1495830
FT /systematic_id="SPAC5D6.10c"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -23653,6 +23656,8 @@ FT /colour=8
FT /product="Schizosaccharomyces pombe specific protein"
FT /systematic_id="SPAC23H4.05c"
FT /db_xref="SPD:01/01D06"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20140820"
FT lncRNA complement(1599351..1599554)
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.2712"
Expand Down Expand Up @@ -32278,6 +32283,8 @@ FT /colour=8
FT /product=" Schizosaccharomyces pombe specific protein"
FT /systematic_id="SPAC23C11.07"
FT /db_xref="SPD:01/01H07"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20140820"
FT CDS join(2145681..2145779,2145927..2145987,2146043..2146170,2146326..2146388)
FT /colour=2
FT /primary_name="php3"
Expand Down Expand Up @@ -38662,7 +38669,8 @@ FT /systematic_id="SPNCRNA.3143"
FT /product="non-coding RNA"
FT CDS complement(join(2540247..2540642,2540693..2540725))
FT /colour=10
FT /product="conserved protein, UPF0047 family"
FT /product="conserved protein, UPF0047 family, implicated in
FT thiamine or TPP metabolism"
FT /systematic_id="SPAC4A8.02c"
FT /db_xref="SPD:04/04D08"
FT /controlled_curation="term=species distribution, no
Expand Down Expand Up @@ -41571,8 +41579,8 @@ FT /systematic_id="SPAPB2B4.04c"
FT /db_xref="PMID:21511999"
FT CDS complement(2713053..2716931)
FT /colour=2
FT /product="calcium transporting P-type ATPase P2 type,
FT Pmc1"
FT /product="plasma membrane calcium transporting P-type
FT ATPase P2 type, Pmc1"
FT /primary_name="pmc1"
FT /systematic_id="SPAPB2B4.04c"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -46192,6 +46200,8 @@ FT /colour=8
FT /product="Schizosaccharomyces pombe specific protein"
FT /systematic_id="SPAC1786.04"
FT /db_xref="SPD:51/51G11"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20140820"
FT 5'UTR 3033806..3034881
FT /systematic_id="SPAC1786.02"
FT /db_xref="PMID:30566651"
Expand Down Expand Up @@ -52777,11 +52787,10 @@ FT 3'UTR complement(3467903..3468196)
FT /systematic_id="SPAC3A11.02"
FT /db_xref="PMID:21511999"
FT CDS complement(join(3468197..3469845,3469904..3470006))
FT /colour=10
FT /colour=7
FT /obsolete_name="scp3"
FT /primary_name="cps3"
FT /product="zf-CCCH type zinc finger protein, unknown
FT biological role Cps3, potential makorin ortholog"
FT /product="E3 ubiquitin ligase, makorin family"
FT /synonym="mug188"
FT /systematic_id="SPAC3A11.02"
FT /db_xref="SPD:36/36E10"
Expand Down Expand Up @@ -54383,6 +54392,8 @@ FT LLLFFFFLLFFLSFSFSFS"
FT /product="Schizosaccharomyces pombe specific protein"
FT /systematic_id="SPAC17A2.11"
FT /db_xref="SPD:07/07E10"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20140820"
FT 3'UTR 3577763..3578782
FT /systematic_id="SPAC17A2.11"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -59700,11 +59711,8 @@ FT 3'UTR complement(3942040..3942298)
FT /systematic_id="SPAC2F3.18c"
FT /db_xref="PMID:21511999"
FT CDS complement(join(3942299..3942364,3942506..3942669,3942775..3942802))
FT /colour=10
FT /product="small endoribonuclease with 2 transmembrane
FT domains, RNASEK, poorly chracterized protein implicated in
FT endocytic pathway, vacuolar pricesses, protection against
FT virus's"
FT /colour=7
FT /product=" V-type ATPase V0 subunit f"
FT /systematic_id="SPAC2F3.18c"
FT /db_xref="SPD:51/51G08"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -65464,7 +65472,9 @@ FT /product="non-coding RNA"
FT /obsolete_name="SPAC27F1.05c-antisense-1"
FT CDS complement(4323652..4325106)
FT /colour=10
FT /product="aminotransferase class-III, unknown specificity"
FT /product="aminotransferase class-III, possible
FT transaminase, unknown specificity, implicated in amino
FT acid or cofactor metabolism"
FT /systematic_id="SPAC27F1.05c"
FT /db_xref="SPD:23/23E01"
FT /controlled_curation="term=species distribution, conserved
Expand Down
24 changes: 15 additions & 9 deletions data/chromosome2.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -3749,7 +3749,8 @@ FT /systematic_id="SPBC1773.03c"
FT CDS complement(286039..287418)
FT /colour=10
FT /product="aminotransferase class-III, possible
FT transaminase, unknown specificity"
FT transaminase, unknown specificity, implicated in amino
FT acid or cofactor metabolism"
FT /db_xref="SPD:44/44D03"
FT /systematic_id="SPBC1773.03c"
FT /controlled_curation="term=species distribution, no
Expand Down Expand Up @@ -14987,7 +14988,8 @@ FT condition=FYECO:0000126; during=GO:0072690;
FT score=6.047770; db_xref=PMID:30566651"
FT CDS 1050315..1051292
FT /colour=10
FT /product="CH-OH group oxidoreductase"
FT /product="lipid raft associated CH-OH group
FT oxidoreductase, implicated in lipid/sterol metabolism"
FT /db_xref="SPD:14/14A08"
FT /systematic_id="SPBC337.11"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -24931,8 +24933,9 @@ FT /systematic_id="SPBC21B10.02"
FT /db_xref="PMID:21511999"
FT CDS complement(1669719..1670144)
FT /colour=10
FT /product="conserved fungal protein, possibly RNA binding,
FT low similarity to ribosomal protein L3"
FT /product="conserved fungal protein, possible RNA binding,
FT possible nuclease inhibitor, low similarity to ribosomal
FT protein L3"
FT /db_xref="SPD:05/05B10"
FT /systematic_id="SPBC21B10.02"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -37705,7 +37708,7 @@ FT PMID:18641648, transcription start or end may not be
FT exact"
FT CDS complement(2488325..2488936)
FT /colour=10
FT /product="DUF2458 conserved fungal protein"
FT /product="DUF2458 family conserved fungal protein"
FT /db_xref="SPD:06/06H02"
FT /systematic_id="SPBC557.02c"
FT /controlled_curation="term=species distribution, no
Expand Down Expand Up @@ -43051,8 +43054,8 @@ FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.5835"
FT /product="non-coding RNA"
FT CDS complement(2825692..2826066)
FT /colour=10
FT /product="DUF2406 family conserved fungal protein"
FT /colour=7
FT /product="1,3-beta-glucan synthesis regulator, Gsr1"
FT /db_xref="SPD:02/02F11"
FT /systematic_id="SPBC19C7.04c"
FT /controlled_curation="term=species distribution, conserved
Expand All @@ -43067,6 +43070,7 @@ FT /controlled_curation="term=gene expression, RNA level;
FT annotation_extension=in_presence_of(CHEBI:47600);
FT qualifier=increased; evidence=ECO:0000058;
FT db_xref=PMID:22840777; date=20121018"
FT /primary_name="gsr1"
FT 5'UTR complement(2826067..2826672)
FT /systematic_id="SPBC19C7.04c"
FT /db_xref="PMID:30566651"
Expand Down Expand Up @@ -57197,8 +57201,9 @@ FT /feature_source="evidence=ECO:0000309; source=SO:0001238;
FT condition=FYECO:0000126; during=GO:0072690;
FT score=5.463740; db_xref=PMID:30566651"
FT CDS join(3734792..3735902,3735949..3736232,3736288..3736725,3736788..3736904)
FT /colour=10
FT /product="ER membrane protein"
FT /colour=7
FT /product="ER membrane protein involved in protein folding,
FT human TAPT1 ortholog"
FT /db_xref="SPD:27/27H12"
FT /systematic_id="SPBC13G1.05"
FT /controlled_curation="term=species distribution, conserved
Expand All @@ -57213,6 +57218,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20081110"
FT /controlled_curation="term=species distribution,
FT predominantly single copy (one to one); date=20081110"
FT /primary_name="emp65"
FT lncRNA complement(3735189..3736662)
FT /db_xref="PMID:29914874"
FT /db_xref="PMID:21511999"
Expand Down
25 changes: 17 additions & 8 deletions data/chromosome3.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -2093,8 +2093,9 @@ FT 3'UTR complement(151093..151306)
FT /db_xref="EMBL:AU009770"
FT /systematic_id="SPCC320.08"
FT CDS complement(151307..152824)
FT /colour=7
FT /product="transmembrane transporter (predicted)"
FT /colour=2
FT /product="plasma membrane queuine and queuosine
FT transmembrane importer, Qtp1"
FT /db_xref="SPD:24/24F05"
FT /systematic_id="SPCC320.08"
FT /controlled_curation="term=species distribution, no
Expand All @@ -2111,6 +2112,9 @@ FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20081110"
FT /controlled_curation="term=species distribution,
FT predominantly single copy (one to one); date=20081110"
FT /controlled_curation="term=Queuosine/ queuine TransPorter;
FT date=20241205"
FT /primary_name="qtp1"
FT 5'UTR complement(152825..152911)
FT /systematic_id="SPCC320.08"
FT /db_xref="PMID:30566651"
Expand Down Expand Up @@ -3304,6 +3308,8 @@ FT /systematic_id="SPCC794.16"
FT /product="Schizosaccharomyces pombe specific protein"
FT /controlled_curation="term=warning, new gene;
FT date=20230109"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces pombe specific; date=20140820"
FT /colour=8
FT lncRNA 256476..256823
FT /db_xref="PMID:29914874"
Expand Down Expand Up @@ -11729,6 +11735,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20081110"
FT /controlled_curation="term=species distribution,
FT predominantly single copy (one to one); date=20081110"
FT /primary_name="wdr89"
FT 3'UTR 846920..847352
FT /systematic_id="SPCC63.06"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -22561,7 +22568,8 @@ FT /product="non-coding RNA"
FT CDS 1635974..1640062
FT /colour=2
FT /primary_name="pmd1"
FT /product="leptomycin transmembrane transporter Pmd1"
FT /product="plasma membrane leptomycin transmembrane
FT transporter Pmd1"
FT /db_xref="SPD:30/30F04"
FT /systematic_id="SPCC663.03"
FT /controlled_curation="term=ABC transporter family;
Expand Down Expand Up @@ -27912,8 +27920,8 @@ FT /feature_source="evidence=ECO:0000309; source=SO:0001238;
FT condition=FYECO:0000126; during=GO:0072690;
FT score=963.738000; db_xref=PMID:30566651"
FT CDS join(2025579..2025699,2025808..2027330)
FT /colour=10
FT /product="zf-CCCH type zinc finger protein"
FT /colour=7
FT /product="E3 ubiquitin ligase, makorin family"
FT /synonym="SPCC1906.05"
FT /db_xref="SPD:36/36A10"
FT /systematic_id="SPCC1739.01"
Expand Down Expand Up @@ -32767,10 +32775,10 @@ FT /feature_source="evidence=ECO:0000309; source=SO:0001238;
FT condition=FYECO:0000126; during=GO:0072690;
FT score=46.780800; db_xref=PMID:30566651"
FT CDS complement(join(2369108..2369592,2369649..2369790))
FT /colour=10
FT /product="DUF2406 family conserved fungal protein"
FT /colour=7
FT /product="1,3-beta-glucan synthesis regulator, Gsr2"
FT /db_xref="SPD:07/07H10"
FT /primary_name="mug9"
FT /synonym="mug9"
FT /systematic_id="SPCC70.09c"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
Expand All @@ -32780,6 +32788,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in fungi only; date=20081110"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20080202"
FT /primary_name="gsr2"
FT 5'UTR complement(2369791..2369852)
FT /systematic_id="SPCC70.09c"
FT /db_xref="PMID:30566651"
Expand Down
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