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  1. lammps_le lammps_le Public

    Loop extrusion module with LAMMPS

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  2. DPDchrom DPDchrom Public

    Reconstruction of 3D conformation of chromatin fiber using single cell Hi-C data

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  3. dstMatrixFromLmpFile dstMatrixFromLmpFile Public

    Short script to create distance matrix in dat fromat from lmp file (LAMMPS).

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  6. lammpstrj_motion_correction lammpstrj_motion_correction Public

    Subtract the translational and rotational movement of the polymer chain to study subdiffusion. It works quite bad for systems with less than 50 beads.

    Python