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add note about running wma800 through bsub
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tashrifbillah authored Oct 11, 2023
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Expand Up @@ -611,6 +611,8 @@ The same command applies for running it on PNL's GRX node: `dna007.partners.org`
> NEW_SOFT_DIR=/data/pnl/soft/pnlpipe3/
You should consult [SlicerDMRI/whitematteranalysis](https://github.com/SlicerDMRI/whitematteranalysis) repository
for meaning of the above arguments.
##### Through SSH
Expand All @@ -625,6 +627,7 @@ wm_apply_ORG_atlas_to_subject.sh \
However, running it through SSH requires availability of `xvfb-run` on that server--may it be a PNL workstation or a GRX node.
The good news is that we have already installed `xorg-x11-server-Xvfb` in most servers. So you should be all set.
But if you find `xvfb-run`'s absence, reach out to PNL engineers for help.
Lastly, you can use the same `-x 1` flag to run it through `bsub` on `pri_pnl` queue in ERIS cluster.
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