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add link to test dataset
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pmenzel committed Jan 19, 2024
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Expand Up @@ -80,6 +80,9 @@ snakemake -s /opt/software/ont-assembly-snake/Snakefile --use-conda --cores 20

Assemblies created in each step are contained in the files `output.fa` in each folder and symlinked as `.fa` files in the `assemblies/` folder, see the example below.

## Test dataset
A test dataset containing a pair of ONT and Illumina sequencing data from the same bacterial isolate is available in the repository [ont-assembly-snake-testdata](https://github.com/pmenzel/ont-assembly-snake-testdata). See the instructions therein on how to download the dataset and run the ont-assembly-snake and [score-assemblies](https://github.com/pmenzel/score-assemblies) workflows.

## Included Programs

### Filtlong
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