allow higher Snakemake version in main env #14
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| name: check-conda-envs | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| jobs: | |
| check-conda-upgrades: | |
| runs-on: "ubuntu-latest" | |
| # this defines the repository folder in which the yaml files are located | |
| env: | |
| TARGET: "env" | |
| steps: | |
| # checkout this repository | |
| - uses: actions/checkout@v3 | |
| # checkout pmenzel/gh-actions | |
| - uses: actions/checkout@v3 | |
| with: | |
| repository: pmenzel/gh-actions | |
| ref: master | |
| path: ./external/gh-actions | |
| # https://github.com/marketplace/actions/setup-miniconda | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| channels: conda-forge,bioconda | |
| - run: | | |
| conda info | |
| - name: Run gh-actions/check-conda-envs/check-all-conda-envs.sh | |
| run: ./external/gh-actions/check-conda-envs/check-all-conda-envs.sh ${{env.TARGET}} | |