add canu assembler #8
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name: check-conda-envs | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
workflow_dispatch: | |
jobs: | |
check-conda-upgrades: | |
runs-on: "ubuntu-latest" | |
# this defines the repository folder in which the yaml files are located | |
env: | |
TARGET: "env" | |
steps: | |
# checkout this repository | |
- uses: actions/checkout@v3 | |
# checkout pmenzel/gh-actions | |
- uses: actions/checkout@v3 | |
with: | |
repository: pmenzel/gh-actions | |
ref: master | |
path: ./external/gh-actions | |
# https://github.com/marketplace/actions/setup-miniconda | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
channels: conda-forge,bioconda | |
- run: | | |
conda info | |
- name: Run gh-actions/check-conda-envs/check-all-conda-envs.sh | |
run: ./external/gh-actions/check-conda-envs/check-all-conda-envs.sh ${{env.TARGET}} | |