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Implement pre-training on control cells #53

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Implement pre-training on control cells #53

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c314955
implement basic pretraining using pyro param store hack
logan-blaine Nov 25, 2025
a3e3199
add gpu support, update pretrain recipe
logan-blaine Dec 4, 2025
947fef7
add optional pretraining routine to main train fn
logan-blaine Dec 5, 2025
a13689f
initialize lfc values to basic statistical estimates
logan-blaine Dec 9, 2025
79eae29
expose utils module
logan-blaine Dec 9, 2025
cee99b7
add quantile computation to p_value function
logan-blaine Dec 9, 2025
3621938
allow choice of method (default or t approx.) in main wrapper
logan-blaine Dec 9, 2025
2382569
fix bug in multiple testing
logan-blaine Dec 9, 2025
e07638c
make lfc initialization scalable
logan-blaine Dec 12, 2025
c380e4a
add documentation, update guide hyperparams
logan-blaine Dec 16, 2025
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -43,3 +43,4 @@ docs/notebooks/*.pt
/.hatch/

src/perturbo/simulation/.ipynb_checkpoints/
lightning_logs/
2 changes: 1 addition & 1 deletion src/perturbo/__init__.py
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@@ -1,6 +1,6 @@
from importlib.metadata import version

from . import models, simulation
from . import models, simulation, utils
from .models import PERTURBO
from .simulation import Learn_Data, Simulate_Data

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