RGB/FLIR Lettuce Detection

This script detects individual plants in GeoTIF images, including plot clipped GeoTIFs. The detections are saved as a CSV file containing plot information and phenotype traits, such as bounding area.

Inputs

Directory containing geoTIFFs.

Outputs

• CSV file containing:
  • Date
  • Plot
  • Genotype
  • Bounding box corner and center coordinates (EPSG:4326)
  • Bounding area in m².

Arguments and Flags

• Positional Arguments:

  • Directory containing files to process: 'dir'

• Required Arguments:

  • A .pth model file: '-m', '--model'
  • GeoJSON containing plot boundaries: '-g', '--geojson'
  • Scan date: '-d', '--date'
  • Specify if FLIR or RGB images: '-t', '--type', choices=['FLIR', 'RGB']

• Optional Arguments:

  • Output directory: '-o', '--outdir', default='detect_out'
  • Classes to detect: '-c', '--detect_class', nargs='+', default=['lettuce']