PSii Segmentation

This scripts segments pixels based on experimentally-derived pixel thresholds. Refer to Herrit et al., 2021 for more information about pixel thresholds.

Inputs

Path to directory containing GeoTIF images.

Outputs

CSV file containing image thresholds for each plot.

Arguments and Flags

• Positional Arguments:

  • Directories containing TIF images: 'dirs', nargs='+'

• Optional Arguments:

  • Output directory: '-o', '--outdir', default='sii_segmentation_out'