FLiR Plant Temperature

This script detects individual plants and extracts their canopy temperature from thermal imagery.

Inputs

Directory containing GeoTIFs.

Outputs

The script outputs a single CSV file listing all plant detections, including their geocoordinates, bounding area, and canopy temperature.

Arguments and Flags

• Positional Arguments:

  • Directory containing geoTIFFs: 'dir'

• Required Arguments:

  • Object detection model: '-m', '--model'
  • GeoJSON containing plot boundaries: '-g', '--geojson'
  • Date of data collection: '-d', '--date'

• Optional Arguments:

  • Output directory: '-od', '--outdir'
  • Output filename: '-of', '--outfile'
  • Central processing units (CPUs): '-c', '--cpu'