Reverted to OWLAPI 4 so we can support Elk 0.4.3.

phyloref · Mar 17, 2024 · 3d04c30 · 3d04c30
1 parent 079fda4
commit 3d04c30
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/pom.xml b/pom.xml
@@ -113,7 +113,7 @@
         <dependency>
             <groupId>net.sourceforge.owlapi</groupId>
             <artifactId>owlapi-apibinding</artifactId>
-            <version>5.5.0</version>
+            <version>4.5.26</version>
         </dependency>
 
         <!-- To support JSON-LD input -->

diff --git a/src/main/java/org/phyloref/jphyloref/helpers/OWLHelper.java b/src/main/java/org/phyloref/jphyloref/helpers/OWLHelper.java
@@ -110,6 +110,7 @@ public static Map<String, Set<String>> getAnnotationLiteralsForEntity(
 
     // Go through all known annotations, looking for OWLLiterals.
     EntitySearcher.getAnnotations(entity, ontology, annotationProperty)
+        .stream()
         .filter(annotation -> annotation.getValue() instanceof OWLLiteral)
         .forEach(
             annotation -> {

diff --git a/src/main/java/org/phyloref/jphyloref/helpers/PhylorefHelper.java b/src/main/java/org/phyloref/jphyloref/helpers/PhylorefHelper.java
@@ -313,8 +313,7 @@ public static List<PhylorefStatus> getStatusesForPhyloref(
 
     // Retrieve holdsStatusInTime to determine the active status of this phyloreference.
     List<OWLAnnotation> holdsStatusInTime =
-        EntitySearcher.getAnnotations(phyloref, ontology, pso_holdsStatusInTime)
-            .collect(Collectors.toList());
+        new ArrayList<>(EntitySearcher.getAnnotations(phyloref, ontology, pso_holdsStatusInTime));
 
     // Read through the list of OWLAnnotations to create corresponding PhylorefStatus objects.
     for (OWLAnnotation statusInTime : holdsStatusInTime) {