Close #88

README.md

@@ -1,4 +1,5 @@
 ![Python package](https://github.com/pha4ge/hAMRonization/workflows/test_package/badge.svg)
+[![Preprint](https://img.shields.io/badge/Preprint-10.1101/2024.03.07.583950-blue)](https://doi.org/10.1101/2024.03.07.583950)
 [![DOI](https://zenodo.org/badge/248040662.svg)](https://zenodo.org/badge/latestdoi/248040662)
 [![Docs English](https://img.shields.io/badge/Documentation-English-blue)](https://github.com/pha4ge/hAMRonization/blob/master/docs/subgrant/PHA4GE_AMR_SubGrant_Documentation.pdf)
 [![Docs English](https://img.shields.io/badge/Documentation-Español-blue)](https://github.com/pha4ge/hAMRonization/blob/master/docs/subgrant/PHA4GE_hAMRonization_espan%CC%83ol.pdf)
@@ -346,3 +347,6 @@ Here are some known issues that we would welcome input on trying to solve!
 
 - `contig_id` isn't general enough when some tools this ID naturally corresponds to a `read_name` (deepARG), individual ORF (resfams), or protein sequence (AFP with protein input): *change to `query_id_name` or similar?*
 
+## Citation
+If you use hAMRonization please cite the following publication:
+> I Mendes et al. 2024. "hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling". bioRxiv. https://doi.org/10.1101/2024.03.07.583950