Scheid_RNS-IEEG-Biomarkers

Tools for biomarker analysis and figure generation used in the following publication:

Scheid BH, Bernabei JM, Khambhati AN, Mouchtaris S, Jeschke J, Bassett DS, et al. Intracranial electroencephalographic biomarker predicts effective responsive neurostimulation for epilepsy prior to treatment. Epilepsia. 2022 Jan 7; DOI: https://doi.org/10.1111/epi.17163

Requirements

• MATLAB >= 2018a
• MATLAB Statistics and Machine Learning Toolbox
• User account on http://ieeg.org
• ieeg command line interface (ieeg cli)

Data Access

• Create an account on ieeg.org
• Download the ieeg cli
• Add ieeg to your PATH variable as a link to ieeg.bin (usually added as /usr/local/bin/ieeg-cli-1.xx.xx/ieeg)
• Use the following commands to access the data:

ieeg download-rec-objects --dataset UCSF_Biomarkers_Data UCSF_shared.mat
ieeg download-rec-objects --dataset NYU_Biomarkers_Data NYU_shared.mat
ieeg download-rec-objects --dataset Penn_Biomarkers_Data Penn_shared.mat

Running the Pipeline

1. Add path to figure folder
2. Add path to data folder
3. Hit Run!