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Pipeline for analysis in Scheid et al. Intracranial electroencephalographic biomarker predicts effective responsive neurostimulation for epilepsy prior to treatment. Epilepsia. 2022

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Scheid_RNS-IEEG-Biomarkers

Tools for biomarker analysis and figure generation used in the following publication:

Scheid BH, Bernabei JM, Khambhati AN, Mouchtaris S, Jeschke J, Bassett DS, et al. Intracranial electroencephalographic biomarker predicts effective responsive neurostimulation for epilepsy prior to treatment. Epilepsia. 2022 Jan 7; DOI: https://doi.org/10.1111/epi.17163

Requirements

Data Access

  • Create an account on ieeg.org
  • Download the ieeg cli
  • Add ieeg to your PATH variable as a link to ieeg.bin (usually added as /usr/local/bin/ieeg-cli-1.xx.xx/ieeg)
  • Use the following commands to access the data:
ieeg download-rec-objects --dataset UCSF_Biomarkers_Data UCSF_shared.mat
ieeg download-rec-objects --dataset NYU_Biomarkers_Data NYU_shared.mat
ieeg download-rec-objects --dataset Penn_Biomarkers_Data Penn_shared.mat

Running the Pipeline

  1. Add path to figure folder
  2. Add path to data folder
  3. Hit Run!

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Pipeline for analysis in Scheid et al. Intracranial electroencephalographic biomarker predicts effective responsive neurostimulation for epilepsy prior to treatment. Epilepsia. 2022

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