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Taiwan AI Labs' solution to Kaggle competition "Personalized Medicine: Redefining Cancer Treatment"

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kaggle-redefining-cancer-treatment-ailabs

This repository contains solution to Kaggle competition "Personalized Medicine: Redefining Cancer Treatment" by Taiwan AI Labs

Prerequisites

  • Python 3.4 or above
  • virtualenv
  • required packages are listed in requirements.txt

Description

Detailed description can be found in description.pdf

How to run

After cloning this repository, we recommend setting up a python virtual environment

virtualenv kaggle

Remember to activate the virtual environment before running

source kaggle/bin/activate

Before running the experiments, please run preprocess.sh to install required python packages

bash preprocess.sh

We need nltk tokenizers, so please download it manually by

python3 -m nltk.downloader -d $PATH_TO_YOUR_HOME/nltk_data punkt

For running all the experiments, simply use run.sh:

bash run.sh

run.sh will run pretrain.py and then train.py.

After a successful run, you should find two submission files placed in result/ directory.

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Taiwan AI Labs' solution to Kaggle competition "Personalized Medicine: Redefining Cancer Treatment"

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