Merge pull request #544 from pcingola/downloads

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pcingola · Jun 17, 2024 · 5504000 · 5504000
2 parents d59999b + cfab943
commit 5504000
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Showing 23 changed files with 136,189 additions and 406 deletions.
diff --git a/.classpath b/.classpath
@@ -36,21 +36,18 @@
 			<attribute name="optional" value="true"/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="src" path="target/generated-sources/annotations">
+	<classpathentry kind="src" output="target/test-classes" path="target/generated-test-sources/test-annotations">
 		<attributes>
 			<attribute name="optional" value="true"/>
+			<attribute name="test" value="true"/>
 			<attribute name="maven.pomderived" value="true"/>
 			<attribute name="ignore_optional_problems" value="true"/>
 			<attribute name="m2e-apt" value="true"/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="target/generated-test-sources/test-annotations">
+	<classpathentry kind="src" path="target/generated-sources/annotations">
 		<attributes>
 			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-			<attribute name="ignore_optional_problems" value="true"/>
-			<attribute name="m2e-apt" value="true"/>
-			<attribute name="test" value="true"/>
 		</attributes>
 	</classpathentry>
 	<classpathentry kind="output" path="target/classes"/>

diff --git a/.gitignore b/.gitignore
@@ -2,7 +2,10 @@
 /config/data
 /db
 /target
+.venv
 snpEff_genes.txt
 snpEff_summary.html
 **/*.swp
 .venv
+search_index.json
+sitemap.xml.gz
diff --git a/.vscode/launch.json b/.vscode/launch.json
@@ -10,7 +10,7 @@
             "request": "launch",
             "mainClass": "org.snpeff.SnpEff",
             "projectName": "SnpEff",
-            "args": "ann -v -fastaprot /Users/kqrw311/production_informatics/proteogenomics/data/erbb2.uniq.ann.fa GRCh38.mane.1.2.ensembl /Users/kqrw311/production_informatics/proteogenomics/data/erbb2.uniq.vcf"
+            "args": "build -v hg19"
         },
     ]
 }