Merge pull request #113 from paulsengroup/ci/py313

Support Python 3.13

.github/workflows/pip.yml

@@ -47,7 +47,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [windows-2019, macos-latest, ubuntu-latest]
-        python-version: ["3.9", "3.12", "3.13"]
+        python-version: ["3.9", "3.13"]
 
     runs-on: ${{ matrix.os }}
 
@@ -83,11 +83,6 @@ jobs:
           echo 'CXX=clang++' >> $GITHUB_ENV
 
       - name: Build and install
-        if: matrix.python-version == '3.13'
-        run: pip install --verbose '.[numpy,scipy,test]'
-
-      - name: Build and install
-        if: matrix.python-version != '3.13'
         run: pip install --verbose '.[all,test]'
 
       - name: Save Conan cache

docs/installation.rst

@@ -58,7 +58,7 @@ Conda (bioconda)
 From source
 -----------
 
-Building hictkpy from source should not be necessary for regular users, as we publish pre-built wheels for Linux, MacOS, and Windows for all Python versions we support (currently these include all CPython versions from 3.9 up until 3.12). For a complete and up-to-date list of available wheels refer to the `Download files <https://pypi.org/project/hictkpy/#files>`_ page on hictkpy's `homepage <https://pypi.org/project/hictkpy/>`_ on PyPI.
+Building hictkpy from source should not be necessary for regular users, as we publish pre-built wheels for Linux, MacOS, and Windows for all Python versions we support (currently these include all CPython versions from 3.9 up until 3.13). For a complete and up-to-date list of available wheels refer to the `Download files <https://pypi.org/project/hictkpy/#files>`_ page on hictkpy's `homepage <https://pypi.org/project/hictkpy/>`_ on PyPI.
 
 Building hictkpy's wheels from source requires a compiler toolchain supporting C++17, such as:
 

pyproject.toml

@@ -119,10 +119,10 @@ manylinux-pypy_x86_64-image = "manylinux_2_28"
 manylinux-pypy_i686-image = "manylinux_2_28"
 manylinux-pypy_aarch64-image = "manylinux_2_28"
 
-skip = ["cp313*", "cp314*", "*musllinux*", "pp*"]
+skip = ["cp314*", "*musllinux*", "pp*"]
 test-command = "python -m pytest {project}/test"
 test-extras = ["test", "numpy", "pandas", "pyarrow", "scipy"]
-test-skip = ["cp313*", "cp314*", "*universal2", "pp*"]
+test-skip = ["cp314*", "*universal2", "pp*"]
 
 # Setuptools bug causes collision between pypy and cpython artifacts
 before-build = [