Merge branch 'master' into update-version

.github/workflows/python-package-conda-pip.yml

@@ -0,0 +1,46 @@
+name: Python Package using Conda
+
+on: [push]
+
+jobs:
+  build-linux:
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 5
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v3
+      with:
+        python-version: '3.10'
+    - name: Add conda to system path
+      run: |
+        # $CONDA is an environment variable pointing to the root of the miniconda directory
+        echo $CONDA/bin >> $GITHUB_PATH
+    - name: Install dependencies
+      run: |
+        conda install -c conda-forge -c bioconda snakemake pip mamba
+        pip install .
+    - name: Deploy panoptes
+      run: |
+        panoptes &
+    - name: Test panoptes
+      run: |
+        response=$(curl http://127.0.0.1:5000/api/service-info)
+        if [ "$response" = "{\"status\":\"running\"}" ]; then
+                echo "Success";
+                exit 0;
+        else
+                echo "Fail";
+                exit 1;
+        fi
+    - name: Run test workflow
+      run: |
+        snakemake --version
+        cd ..
+        git clone https://github.com/panoptes-organization/snakemake_example_workflow.git
+        cd snakemake_example_workflow
+        ls
+        bash run_local.sh
+        

contributors.md

@@ -6,6 +6,8 @@
 - Bruno P. Kinoshita (@kinow)
 - Georgios Kostoulas (@gkostoulas)
 - Johannes Köster (@johanneskoester)
+- Russell Neches (@ryneches)
 - Georgios Ntalaperas (@gntalaperas)
 - Dimitrios Rekoumis (@drekoumis)
 - Vanessa Sochat (@vsoch)
+

setup.py

@@ -7,7 +7,7 @@
 
 setup(
     name='panoptes-ui',
-    version='0.2.2',
+    version='0.2.3',
     url='https://github.com/panoptes-organization/panoptes',
     license='MIT',
     author='panoptes-organization',