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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 342 38

  2. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 184 38

  3. impg impg Public

    implicit pangenome graph

    Rust 29 5

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 56 6

Repositories

Showing 10 of 59 repositories
  • pggb Public

    the pangenome graph builder

    pangenome/pggb’s past year of commit activity
    Shell 342 MIT 38 51 1 Updated Jul 2, 2024
  • chromosome_communities Public

    Recombination between heterologous human acrocentric chromosomes

    pangenome/chromosome_communities’s past year of commit activity
    R 5 0 0 0 Updated Jul 2, 2024
  • MemPanG24 Public Forked from pangenome/MemPanG23

    Computational Pangenomics in Memphis

    pangenome/MemPanG24’s past year of commit activity
    HTML 2 MIT 2 0 0 Updated Jun 24, 2024
  • vcfbub Public

    use variant nesting information to flter overlapping sites from vg deconstruct output

    pangenome/vcfbub’s past year of commit activity
    Rust 22 MIT 1 1 1 Updated Jun 21, 2024
  • odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    pangenome/odgi’s past year of commit activity
    C++ 184 MIT 38 41 (1 issue needs help) 7 Updated Jun 20, 2024
  • lifetree Public

    hard mode all genomes alignment

    pangenome/lifetree’s past year of commit activity
    Shell 5 2 0 0 Updated Jun 18, 2024
  • povu Public
    pangenome/povu’s past year of commit activity
    C++ 8 MIT 1 1 0 Updated May 29, 2024
  • MemPanG25 Public Forked from pangenome/MemPanG24

    Computational Pangenomics in Memphis

    pangenome/MemPanG25’s past year of commit activity
    HTML 0 MIT 2 0 0 Updated May 22, 2024
  • impg Public

    implicit pangenome graph

    pangenome/impg’s past year of commit activity
    Rust 29 MIT 5 5 1 Updated May 21, 2024
  • pggb-paper Public

    The PanGenome Graph Builder

    pangenome/pggb-paper’s past year of commit activity
    TeX 9 MIT 1 0 0 Updated May 13, 2024
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