OPT preprocessing plugin written for napari
place for the gif
Jump to:
- Data streamed from ImSwitch OPT widget (see details here[LINK])
- Loaded images as data stack
- Other stack 3D volume data formats
Tracking
Inplace operations
Dark-field correction Bright-field correction Bad-pixel correction Intensity correction
Binning ROI -Log
We encourage to create a custom virtual environment for running ToMoDL with the following instructions:
conda create --name opt python>=3.8
or python.exe -m venv opt
Install required packages using pip inside venv:
pip install -r requirements.txt
Contributions are very welcome. Tests can be run with pytest, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the GNU-3 license, "napari-clusters-plotter" is free and open source software
This project was supported by the european horizon Europe project IMAGINE.
If you encounter any problems, please file an issue along with a detailed description.