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Update pybind submodule to support numpy 2 #327

Update pybind submodule to support numpy 2

Update pybind submodule to support numpy 2 #327

Workflow file for this run

name: ci
on:
workflow_dispatch:
pull_request:
push:
branches:
- master
jobs:
build_sdist:
name: Build SDist
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
submodules: true
- name: Build SDist
run: pipx run build --sdist
- name: Check metadata
run: pipx run twine check dist/*
- uses: actions/upload-artifact@v3
with:
path: dist/*.tar.gz
build_wheels:
runs-on: ${{ matrix.os_dist.os }}
env:
MACOSX_DEPLOYMENT_TARGET: "10.15"
CIBW_BUILD: "${{ matrix.os_dist.dist }}"
CIBW_ARCHS_MACOS: "x86_64 universal2 arm64"
CIBW_BEFORE_BUILD: pip install --upgrade ninja
CIBW_TEST_REQUIRES: pytest stim
CIBW_TEST_COMMAND: pytest {project}/tests
strategy:
fail-fast: false
matrix:
os_dist: [
# macosx x86_64
# {os: macos-latest, dist: cp36-macosx_x86_64},
{os: macos-latest, dist: cp37-macosx_x86_64},
{os: macos-latest, dist: cp38-macosx_x86_64},
{os: macos-latest, dist: cp39-macosx_x86_64},
{os: macos-latest, dist: cp310-macosx_x86_64},
{os: macos-latest, dist: cp311-macosx_x86_64},
{os: macos-latest, dist: cp312-macosx_x86_64},
# macosx arm64
{os: macos-latest, dist: cp38-macosx_arm64},
{os: macos-latest, dist: cp39-macosx_arm64},
{os: macos-latest, dist: cp310-macosx_arm64},
{os: macos-latest, dist: cp311-macosx_arm64},
{os: macos-latest, dist: cp312-macosx_arm64},
# macosx universal2
# {os: macos-latest, dist: cp38-macosx_universal2},
# {os: macos-latest, dist: cp39-macosx_universal2},
# {os: macos-latest, dist: cp310-macosx_universal2},
# {os: macos-latest, dist: cp311-macosx_universal2},
# {os: macos-latest, dist: cp312-macosx_universal2},
# windows amd64
# {os: windows-latest, dist: cp36-win_amd64},
{os: windows-latest, dist: cp37-win_amd64},
{os: windows-latest, dist: cp38-win_amd64},
{os: windows-latest, dist: cp39-win_amd64},
{os: windows-latest, dist: cp310-win_amd64},
{os: windows-latest, dist: cp311-win_amd64},
{os: windows-latest, dist: cp312-win_amd64},
# windows win32
# {os: windows-latest, dist: cp36-win32},
{os: windows-latest, dist: cp37-win32},
# scipy install fails
# {os: windows-latest, dist: cp38-win32},
# {os: windows-latest, dist: cp39-win32},
# {os: windows-latest, dist: cp310-win32},
# {os: windows-latest, dist: cp311-win32},
# For arm64, get error "cibuildwheel: No build identifiers selected"
# {os: windows-latest, dist: cp39-win_arm64},
# {os: windows-latest, dist: cp310-win_arm64},
# {os: windows-latest, dist: cp311-win_arm64},
# ubuntu x86_64
# {os: ubuntu-latest, dist: cp36-manylinux_x86_64},
{os: ubuntu-latest, dist: cp37-manylinux_x86_64},
{os: ubuntu-latest, dist: cp38-manylinux_x86_64},
{os: ubuntu-latest, dist: cp39-manylinux_x86_64},
{os: ubuntu-latest, dist: cp310-manylinux_x86_64},
{os: ubuntu-latest, dist: cp311-manylinux_x86_64},
{os: ubuntu-latest, dist: cp312-manylinux_x86_64},
# ubuntu i686
# {os: ubuntu-latest, dist: cp36-manylinux_i686},
{os: ubuntu-latest, dist: cp37-manylinux_i686},
# scipy built distribution not available and build fails on manylinux_i686 for python 3.8 up
# {os: ubuntu-latest, dist: cp38-manylinux_i686},
# {os: ubuntu-latest, dist: cp39-manylinux_i686},
# {os: ubuntu-latest, dist: cp310-manylinux_i686},
# {os: ubuntu-latest, dist: cp311-manylinux_i686},
# Don't include musllinux as it has g++-9 (need g++-10 for <bits>)
# {os: ubuntu-latest, dist: cp36-musllinux_x86_64},
# {os: ubuntu-latest, dist: cp37-musllinux_x86_64},
# {os: ubuntu-latest, dist: cp38-musllinux_x86_64},
# {os: ubuntu-latest, dist: cp39-musllinux_x86_64},
# {os: ubuntu-latest, dist: cp310-musllinux_x86_64},
# {os: ubuntu-latest, dist: cp311-musllinux_x86_64},
# {os: ubuntu-latest, dist: cp36-musllinux_i686},
# {os: ubuntu-latest, dist: cp37-musllinux_i686},
# {os: ubuntu-latest, dist: cp38-musllinux_i686},
# {os: ubuntu-latest, dist: cp39-musllinux_i686},
# {os: ubuntu-latest, dist: cp310-musllinux_i686},
# {os: ubuntu-latest, dist: cp311-musllinux_i686},
]
steps:
- uses: actions/checkout@v3
with:
submodules: true
- uses: actions/setup-python@v4
- name: Install g++
if: runner.os == 'Linux'
run: |
sudo apt update
sudo apt install gcc-10 g++-10
- uses: pypa/[email protected]
- name: Verify clean directory
run: git diff --exit-code
shell: bash
- name: Upload wheels
uses: actions/upload-artifact@v3
with:
path: wheelhouse/*.whl
benchmark_windows:
runs-on: windows-latest
steps:
- uses: actions/checkout@v3
with:
submodules: true
- run: cmake .
- run: cmake --build . --target pymatching_perf --config Release
- run: Release\pymatching_perf.exe
benchmark:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [macos-latest, ubuntu-latest]
steps:
- uses: actions/checkout@v3
with:
submodules: true
- run: CC=gcc-10 CXX=g++-10 cmake .
if: matrix.os == 'ubuntu-latest'
- run: cmake .
if: matrix.os == 'macos-latest'
- run: make pymatching_perf
- run: ./pymatching_perf
gtest:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [macos-latest, ubuntu-latest]
steps:
- uses: actions/checkout@v3
with:
submodules: true
- run: CC=gcc-10 CXX=g++-10 cmake .
if: matrix.os == 'ubuntu-latest'
- run: cmake .
if: matrix.os == 'macos-latest'
- run: make pymatching_tests
- run: ./pymatching_tests
pip_install:
strategy:
fail-fast: false
matrix:
platform: [windows-latest, macos-latest, ubuntu-latest]
python-version: ["3.11"]
runs-on: ${{ matrix.platform }}
steps:
- uses: actions/checkout@v3
with:
submodules: true
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Add requirements
run: python -m pip install --upgrade cmake>=3.12 ninja pytest flake8 pytest-cov setuptools
- name: Build and install
run: python -m pip install --verbose -e .
- name: Test without stim or rustworkx
run: python -m pytest tests
- name: Install stim and rustworkx
run: python -m pip install stim rustworkx
- name: Test with stim and rustworkx using coverage
run: python -m pytest tests --cov=./src/pymatching --cov-report term
- name: flake8
run: flake8 ./src ./tests
build_docs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
submodules: true
- uses: actions/setup-python@v4
- name: Install pandoc
run: |
sudo apt install pandoc
python -m pip install pandoc
- name: Add sphinx requirements
run: python -m pip install -r ./docs/sphinx_docs/requirements.txt
- name: Build and install PyMatching
run: pip install --verbose .
- name: Build docs
run: cd docs/sphinx_docs && make html
codecov:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
submodules: true
- uses: actions/setup-python@v4
with:
python-version: '3.10'
- name: Add requirements
run: python -m pip install --upgrade cmake>=3.12 ninja pytest flake8 pytest-cov stim rustworkx
- name: Build and install
run: pip install --verbose -e .
- name: Run tests and collect coverage
run: pytest tests --cov=./src/pymatching --cov-report=xml
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v3
upload_pypi:
needs: [build_wheels, build_sdist]
runs-on: ubuntu-latest
environment: pypi
permissions:
id-token: write
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
steps:
- uses: actions/download-artifact@v4
with:
# unpacks all CIBW artifacts into dist/
pattern: cibw-*
path: dist
merge-multiple: true
- uses: pypa/gh-action-pypi-publish@release/v1