Merge pull request #12 from ornlneutronimaging/11_fix_notebooks

Fixed notebooks. this refs #11
ornlneutronimaging · Sep 18, 2024 · 54dd7c4 · 54dd7c4
2 parents 8374210 + 76efcb7
commit 54dd7c4
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Showing 15 changed files with 54 additions and 231 deletions.
diff --git a/notebooks/debugging_multi_roi_bug.ipynb b/notebooks/debugging_multi_roi_bug.ipynb
@@ -357,7 +357,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -371,7 +371,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.2"
+   "version": "3.12.6"
   },
   "toc": {
    "colors": {
@@ -394,5 +394,5 @@
   }
  },
  "nbformat": 4,
- "nbformat_minor": 1
+ "nbformat_minor": 4
 }
diff --git a/notebooks/ipts-16259.ipynb b/notebooks/ipts-16259.ipynb
diff --git a/notebooks/notebook_display_with_time_estimation.ipynb b/notebooks/notebook_display_with_time_estimation.ipynb
@@ -169,7 +169,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -183,7 +183,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.2"
+   "version": "3.12.6"
   },
   "toc": {
    "colors": {
@@ -206,5 +206,5 @@
   }
  },
  "nbformat": 4,
- "nbformat_minor": 1
+ "nbformat_minor": 4
 }
diff --git a/notebooks/testing_new_auto_gamma_filtering.ipynb b/notebooks/testing_new_auto_gamma_filtering.ipynb
@@ -215,7 +215,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -229,7 +229,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.3"
+   "version": "3.12.6"
   },
   "toc": {
    "colors": {
@@ -252,5 +252,5 @@
   }
  },
  "nbformat": 4,
- "nbformat_minor": 1
+ "nbformat_minor": 4
 }
diff --git a/notebooks/tutorial_normalization_with_fewer_ob_than_sample.ipynb b/notebooks/tutorial_normalization_with_fewer_ob_than_sample.ipynb
@@ -319,7 +319,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -333,7 +333,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.2"
+   "version": "3.12.6"
   },
   "toc": {
    "colors": {
@@ -356,5 +356,5 @@
   }
  },
  "nbformat": 4,
- "nbformat_minor": 1
+ "nbformat_minor": 4
 }
diff --git a/notebooks/tutorial_normalization_with_fewer_ob_than_sample_MAYBE_BUG.ipynb b/notebooks/tutorial_normalization_with_fewer_ob_than_sample_MAYBE_BUG.ipynb
@@ -126,11 +126,11 @@
    },
    "outputs": [],
    "source": [
-    "path_im = '/Volumes/my_book_thunderbolt_duo/IPTS/IPTS_19558/run_16/'\n",
+    "path_im = '../data/sample'\n",
     "assert os.path.exists(path_im)\n",
-    "sample1 = path_im + '/Image016_00000.fits'\n",
+    "sample1 = path_im + '/0002.tif'\n",
     "assert os.path.exists(sample1)\n",
-    "sample2 = path_im + '/Image016_00001.fits'\n",
+    "sample2 = path_im + '/0003.tif'\n",
     "assert os.path.exists(sample2)"
    ]
   },
@@ -157,9 +157,9 @@
    },
    "outputs": [],
    "source": [
-    "path_ob = '/Volumes/my_book_thunderbolt_duo/IPTS/IPTS_19558/run_08_OB'\n",
-    "ob1 = path_ob + '/Image008_00000.fits'\n",
-    "ob2 = path_ob + '/Image008_00001.fits'\n",
+    "path_ob = '../data/ob'\n",
+    "ob1 = path_ob + '/0005.tif'\n",
+    "ob2 = path_ob + '/0006.tif'\n",
     "assert os.path.exists(ob1)\n",
     "assert os.path.exists(ob2)"
    ]
@@ -188,7 +188,7 @@
    "outputs": [],
    "source": [
     "o_norm = Normalization()\n",
-    "o_norm.load(file=sample1, notebook=True)\n",
+    "o_norm.load(file=[sample1], notebook=True)\n",
     "o_norm.load(file=[ob1, ob2], data_type='ob', notebook=True)"
    ]
   },
@@ -234,8 +234,8 @@
    "source": [
     "x0 = 0\n",
     "y0 = 0\n",
-    "width = 511\n",
-    "height = 511\n"
+    "width = 10\n",
+    "height = 15\n"
    ]
   },
   {
@@ -279,6 +279,15 @@
     "normalized_data = o_norm.data['normalized']"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "o_norm.data"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -339,7 +348,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python [default]",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -353,7 +362,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.3"
+   "version": "3.12.6"
   },
   "toc": {
    "colors": {
@@ -376,5 +385,5 @@
   }
  },
  "nbformat": 4,
- "nbformat_minor": 1
+ "nbformat_minor": 4
 }