Repositories list

• Helixer

  Public
  Using Deep Learning to predict gene annotations

  Python

  •

  GNU General Public License v3.0

  •28•165•39•1•Updated Nov 8, 2024Nov 8, 2024

• helixer_scratch

  Public
  filler scripts, data sort, etc, that shouldn't be lost, but are rather too specific to share

  Jupyter Notebook

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• Predmoter

  Public
  Deep Learning application to predict NGS data

  Python

  •

  GNU General Public License v3.0

  •3•7•0•0•Updated Sep 27, 2024Sep 27, 2024

• predmoter_models

  Public
  Trained Predmoter models

  GNU General Public License v3.0

  •1•1•0•0•Updated Sep 24, 2024Sep 24, 2024

• GeenuFF

  Public
  Schema and API for a relational db that encodes gene models in an explicit, structured, and robust fashion.

  Python

  •

  GNU General Public License v3.0

  •7•6•16•2•Updated Jul 30, 2024Jul 30, 2024

• RNAsleek

  Public
  Semi-automated RNAseq pipeline for a PBSpro cluster

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Dec 14, 2022Dec 14, 2022

• C3_C4_Brassicaceae_Transposons

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 10, 2022Dec 10, 2022

• reproducbility-collection

  Public
  intro to major topics of reproducible data analysis

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 11, 2022May 11, 2022

• workbook_n_vc_demo

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 1, 2022Mar 1, 2022