Repositories list

• tximeta

  Public
  Transcript quantification import with automatic metadata detection

  R

  •11•67•11•0•Updated Jan 17, 2025Jan 17, 2025

• fishpond

  Public
  Differential expression and allelic analysis, nonparametric statistics

  statisticsgenomicsgene-expression+ 5bioconductorrnaseqtranscriptomicssalmonscrnaseq

  R

  •10•28•1•0•Updated Jan 3, 2025Jan 3, 2025

• .github

  Public
  0•0•0•0•Updated Nov 23, 2024Nov 23, 2024

• DESeq2

  Public
  Differential expression of RNA-seq data using the Negative Binomial

  R

  •89•367•2•0•Updated Nov 14, 2024Nov 14, 2024

• rust4bio-piedmont

  Public
  A space to collect code and docs related to Rust for Bioinformatics

  0•4•0•0•Updated Apr 13, 2024Apr 13, 2024

• tximport

  Public
  Transcript quantification import for modular pipelines

  bioconductorrnaseqdeseq2

  R

  •34•137•1•0•Updated Mar 23, 2024Mar 23, 2024

• rnaseqGene

  Public
  RNA-seq workflow: exploratory analysis and differential expression

  TeX

  •40•73•0•0•Updated Nov 14, 2023Nov 14, 2023

• rnaseqDTU

  Public
  RNA-seq workflow: differential transcript usage

  TeX

  •11•20•0•0•Updated Aug 20, 2023Aug 20, 2023

• mrlocus

  Public
  Mendelian Randomization of gene expression (exposure) on GWAS traits (outcome). See website for software usage guide:

  R

  •8•1•1•0•Updated Aug 16, 2023Aug 16, 2023

• comp-bio-setup

  Public
  Set up a computer for Computational Biology

  bioinformaticsrhowto+ 2guidecompbio

  Python

  •3•5•0•0•Updated Oct 4, 2022Oct 4, 2022