Repositories list

• wsidata

  Public
  Efficient data structures and IO for whole slide images analysis

  tissuedeep-learningimage-analysis+ 1digital-pathology

  Python

  •

  MIT License

  •1•6•1•0•Updated Mar 27, 2025Mar 27, 2025

• LazySlide

  Public
  Modular and scalable whole slide image analysis

  deep-learningdigital-pathology

  Python

  •

  MIT License

  •1•21•9•1•Updated Mar 27, 2025Mar 27, 2025

• dask-cluster

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• rendeirolab.github.io

  Public
  A simple static website for the Rendeiro lab

  static-siteacademiaacademic-website

  HTML

  •0•0•3•0•Updated Mar 13, 2025Mar 13, 2025

• wsi

  Public
  A Python package for the processing of whole slide histopathological images

  pythonpackageopenslide-python+ 1histopathology

  Python

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Feb 19, 2025Feb 19, 2025

• lab-manual

  Public
  The Rendeiro lab manual

  documentationresearchacademia+ 1lab-manual

  CSS

  •1•1•0•0•Updated Feb 9, 2025Feb 9, 2025

• _project_template

  Public template
  A cookiecutter template for projects in the Rendeiro lab

  cookiecuttertemplate-project

  Python

  •0•0•1•0•Updated Feb 3, 2025Feb 3, 2025

• sendpaper-chrome-extension

  Public
  Streamlining the process of sharing papers via email

  chrome-extensionacademiaworkflow-tool

  JavaScript

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• LazySlide-nextflow

  Public
  A nextflow workflow using LazySlide for processing whole slide imaging

  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• cytomine_utils

  Public
  A package with utilities to interact with Cytomine's API

  Python

  •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024