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@pathoplexus Pathoplexus

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    10 repositories

    • pathoplexus

      Public
      An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
      bioinformaticspublic-healthdata-sharing
      bioinformaticspublic-healthdata-sharingvirus-evolutionsequencing-datavirus-sequences
      MDX
      •
      GNU Affero General Public License v3.0
      •7•53•105•11•Updated Apr 20, 2026Apr 20, 2026

    • loculus_deployments

      Public
      Gitops definitions for Pathoplexus' Loculus deployments
      0•1•2•0•Updated Apr 17, 2026Apr 17, 2026

    • ena-submission

      Public
      This repo should be used for uploading sequences that have been approved for release to ENA
      Python
      •0•0•10•0•Updated Apr 17, 2026Apr 17, 2026

    • announcement_banners

      Public
      0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • notifications

      Public
      Notifications for Pathoplexus submissions
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•1•0•Updated Apr 14, 2026Apr 14, 2026

    • silo-lineage-hierarchy-definitions

      Public
      Repository to keep SILO lineage hierarchy definition files
      Python
      •
      GNU Affero General Public License v3.0
      •2•1•0•3•Updated Mar 12, 2026Mar 12, 2026

    • example_data

      Public
      Example data for users to try out Pathoplexus
      1•3•0•0•Updated Mar 12, 2026Mar 12, 2026

    • dev_example_data

      Public
      1•0•0•2•Updated Mar 11, 2026Mar 11, 2026

    • curation_data

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

    • curation_reports

      Public
      Curation reports for Pathoplexus
      0•4•7•0•Updated Feb 19, 2025Feb 19, 2025
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