Repositories list

• 2024-gern-dinkum

  Public
  Notebooks for MBL GERN 2024

  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •1•2•0•4•Updated Oct 18, 2024Oct 18, 2024

• 2024-gern-briscoe-model

  Public
  James Briscoe notebooks for MBL GERN 2024 - dynamical systems view of gene regulatory networks

  Jupyter Notebook

  •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• monty-hall

  Public
  Using Jupyter Notebooks to implement a Monte Carlo approach to the Monty Hall problem

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•2•1•Updated Oct 6, 2024Oct 6, 2024

• 2024-ggg-201b-rnaseq

  Public
  RNAseq stuff for 201b

  HTML

  •0•1•0•0•Updated Sep 27, 2024Sep 27, 2024

• 2024-pig-paradigm-workshop

  Public
  Shell

  •

  Creative Commons Zero v1.0 Universal

  •1•1•0•0•Updated Apr 29, 2024Apr 29, 2024

• 2024-GGG298

  Public
  Class materials for GGG 298, Tools for Data Intensive Research, WQ 2024 @ UC Davis.

  R

  •0•2•0•0•Updated Mar 13, 2024Mar 13, 2024

• 2024-ggg-201b-lab

  Public
  0•1•0•0•Updated Mar 8, 2024Mar 8, 2024

• 2024-ggg-201b-hw1-slvanburen

  Public
  2024-ggg-201b-hw1-slvanburen created by GitHub Classroom

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•1•Updated Feb 19, 2024Feb 19, 2024

• 2024-ggg-201b-assembly

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

• 2024-ggg-201b-hw1

  Public template
  HW #1 - variant calling

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

• 2024-ggg-201b-variant-calling

  Public
  Python

  •0•1•0•0•Updated Jan 26, 2024Jan 26, 2024

• 2024-ggg-201b-hw0

  Public template
  0•0•0•0•Updated Jan 15, 2024Jan 15, 2024

• 2023-snakemake-book-draft

  Public
  A DRAFT, early stage book on snakemake.

  Python

  •0•17•22•1•Updated Nov 1, 2023Nov 1, 2023

• 2023-rnaseq

  Public
  0•1•0•0•Updated Oct 4, 2023Oct 4, 2023

• 2020-ggg-201b-rnaseq

  Public
  HTML

  •8•4•0•0•Updated Oct 4, 2023Oct 4, 2023

• 2023-june-datalab-collaboratory

  Public
  Workshop schedule & ancillary information for June 2023 DataLab Collaboratory

  Creative Commons Zero v1.0 Universal

  •0•4•8•0•Updated Jun 25, 2023Jun 25, 2023

• shared-conda-on-farm

  Public
  Scripts and config for setting up a shared conda package space on farm.cse.ucdavis.edu

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•2•0•Updated Apr 17, 2023Apr 17, 2023

• 2023-ggg-201b-lab

  Public
  0•0•0•0•Updated Apr 13, 2023Apr 13, 2023

• 2023-GGG298

  Public
  Class materials for GGG 298, Tools for Data Intensive Research, WQ 2023 UC Davis.

  1•3•0•0•Updated Mar 15, 2023Mar 15, 2023

• 2023-ggg298-sourmash-compare

  Public
  A simple example snakemake workflow

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •23•1•1•0•Updated Mar 15, 2023Mar 15, 2023

• 2023-ggg-201b-lab-hw2

  Public template
  Python

  •0•0•0•0•Updated Mar 13, 2023Mar 13, 2023

• 2023-ggg201b-assembly

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Mar 3, 2023Mar 3, 2023

• 2023-ggg-298-week6

  Public
  Examples and foo for week 6 - small exercises, faded examples, etc.

  0•0•0•0•Updated Feb 15, 2023Feb 15, 2023

• 2023-ggg-201b-lab-hw1

  Public template
  Python

  •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

• 2023-ggg-201b-variant-calling

  Public
  Python

  •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

• angus

  Public
  Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

  HTML

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  Creative Commons Zero v1.0 Universal

  •129•105•18•3•Updated Jan 21, 2023Jan 21, 2023

• 2022-GGG201b-lab

  Public
  GGG 201(b), Intro to Bioinformatics - lab section. Winter 2022 at UC Davis.

  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •2•2•0•0•Updated Mar 14, 2022Mar 14, 2022

• 2022-rnaseq-cloud

  Public template
  HTML

  •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

• 2022-GGG298

  Public
  Winter 2022 - Tools for Data Intensive Research at UC Davis.

  Python

  •

  Creative Commons Zero v1.0 Universal

  •2•4•0•0•Updated Mar 9, 2022Mar 9, 2022

• 2022-ggg-201b-hw2

  Public template
  Python

  •0•0•0•0•Updated Feb 19, 2022Feb 19, 2022