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    26 repositories

    • McQuaC

      Public
      Transform the Quality Control workflow from Knime into a workflow in Nextflow
      Jupyter Notebook
      •
      Other
      •0•2•44•2•Updated Nov 18, 2024Nov 18, 2024

    • ProtStatsWF

      Public
      Statistics Workflows for Proteomics Data
      R
      •
      Other
      •0•0•15•0•Updated Nov 18, 2024Nov 18, 2024

    • unbeQuant

      Public
      unbeQuant - An unknown (not identified) MS1-Feature Quantification Workflow
      Python
      •0•0•3•0•Updated Nov 13, 2024Nov 13, 2024

    • ProGFASTAGen

      Public
      Protein-Graph-FASTA-Generation and Identification
      C++
      •
      Other
      •0•1•0•1•Updated Oct 28, 2024Oct 28, 2024

    • bppg

      Public
      R Package for bipartite peptide-protein graphs
      R
      •
      Other
      •0•1•8•0•Updated Oct 16, 2024Oct 16, 2024

    • ProtGraph

      Public
      ProtGraph - A Graph-Generator for Proteins
      pypipython3biocondagraphproteinfastauniprotpeptide
      Python
      •
      Other
      •5•10•9•0•Updated Oct 4, 2024Oct 4, 2024

    • xic-extractor

      Public
      A XIC-Extractor workflow written in Python/nextflow. Simply extract XICs by providing a CSV with an option to plot the XICs in plotly.
      Python
      •
      Other
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • CalibraCurve

      Public
      CalibraCurve
      calibrationtargeted-proteomicsassaysquantification-limitsdynamic-linear-ranges
      R
      •
      Other
      •1•3•1•0•Updated Aug 16, 2024Aug 16, 2024

    • ProtStatsWF_NF

      Public
      Nextflow scripts and workflows related to the ProtStatsWF R package for statistical analysis and visualization of proteomics data
      Jupyter Notebook
      •0•0•3•0•Updated Aug 8, 2024Aug 8, 2024

    • bipartite-peptide-protein-graphs

      Public
      R
      •
      Other
      •0•1•0•0•Updated Jul 9, 2024Jul 9, 2024

    • nf-cloud

      Public archive
      A web interface for Nextflow
      Python
      •8•0•0•0•Updated Jun 27, 2024Jun 27, 2024

    • macpepdb

      Public
      Python
      •3•2•0•1•Updated Feb 29, 2024Feb 29, 2024

    • macpepdb-web

      Public
      Vue
      •0•0•2•0•Updated Oct 18, 2023Oct 18, 2023

    • denbi_summerschool2023_py_exercises

      Public
      Python exercises for the de.NBI Summer School 2023
      Jupyter Notebook
      •0•0•1•0•Updated Oct 13, 2023Oct 13, 2023

    • QC_Quant

      Public
      Quality control for quantitative proteomics data
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 5, 2023Oct 5, 2023

    • pia

      Public
      📚 🔬 PIA - Protein Inference Algorithms
      Java
      •
      Other
      •9•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • pia-knime-nodes

      Public
      This repository holds the declaration for KNIME nodes to use PIA
      Java
      •5•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • bioinfomatics_for_proteomics_tutorial_data

      Public
      This is just data.
      0•0•0•0•Updated Jan 6, 2023Jan 6, 2023

    • bacterial-proteogenomic-pipeline

      Public archive
      [DEPRECATED] The Bacterial Proteogenomic Pipeline
      Java
      •
      Other
      •1•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • ProtGraphREST

      Public
      A REST-API for generated protein graphs
      Python
      •
      Other
      •1•1•0•0•Updated Oct 20, 2021Oct 20, 2021

    • bionda

      Public
      The biomarker database BIONDA performs text mining tasks using a dictioanry approach to identify diseases and poteincial biomarkers (lncRna, proteins, mirna and genes) in Europe PMC abstracts. The RE is sentence-based.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•1•1•1•Updated Oct 1, 2021Oct 1, 2021

    • FiPSPi

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 1, 2021Jun 1, 2021

    • pia-tutorial

      Public
      Tutorial for PIA - Protein Inference Algorithms
      tutorialproteomics
      TeX
      •3•1•0•0•Updated Nov 12, 2020Nov 12, 2020

    • max-decoy

      Public
      Rust
      •0•1•1•0•Updated Apr 3, 2020Apr 3, 2020

    • pia-web-interface

      Public archive
      The web interface source for PIA
      Java
      •
      Other
      •0•0•0•0•Updated Oct 15, 2019Oct 15, 2019

    • PQI

      Public archive
      Java
      •1•0•0•0•Updated Feb 7, 2018Feb 7, 2018