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    9 repositories

    • iqtree3

      Public
      IQ-TREE version 3: software for phylogenetics
      C++
      •
      GNU General Public License v2.0
      •14•67•16•8•Updated Aug 19, 2025Aug 19, 2025

    • piqtree

      Public
      A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference
      Python
      •
      GNU General Public License v2.0
      •6•33•2•0•Updated Aug 18, 2025Aug 18, 2025

    • iqtree.github.io

      Public
      IQ-TREE main website
      CSS
      •7•2•0•0•Updated Jun 23, 2025Jun 23, 2025

    • paml

      Public
      C
      •
      GNU General Public License v3.0
      •0•3•2•0•Updated May 23, 2025May 23, 2025

    • iqtree2

      Public
      IQ-TREE software version 2: phylogenetics by maximum likelihood
      C++
      •
      GNU General Public License v2.0
      •68•299•106•2•Updated Apr 29, 2025Apr 29, 2025

    • cmaple

      Public
      MAximum Parsimonious Likelihood Estimation in C/C++
      C
      •
      GNU General Public License v2.0
      •3•7•9•0•Updated Apr 27, 2025Apr 27, 2025

    • decenttree

      Public
      Fast Neighbor-Joining and other distance-based methods for phylogenetics
      C++
      •
      GNU General Public License v2.0
      •7•13•5•3•Updated Jun 21, 2024Jun 21, 2024

    • cmaple_api

      Public
      A Demo of CMaple API documentation
      0•0•0•0•Updated May 14, 2024May 14, 2024

    • iqtree1

      Public
      IQ-TREE version 1
      C++
      •
      GNU General Public License v2.0
      •2•2•0•0•Updated Jun 17, 2020Jun 17, 2020