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    212 repositories

    • nemos

      Public
      NEural MOdelS, a statistical modeling framework for neuroscience.
      Python
      •
      MIT License
      •11•104•123•2•Updated Sep 19, 2025Sep 19, 2025

    • stan-playground

      Public
      Run Stan models in the browser
      TypeScript
      •
      Apache License 2.0
      •1•48•11•2•Updated Sep 19, 2025Sep 19, 2025

    • figpack

      Public
      A Python package for creating shareable, interactive, browser-based visualizations
      TypeScript
      •
      Apache License 2.0
      •0•6•3•0•Updated Sep 19, 2025Sep 19, 2025

    • neurosift

      Public
      Browser-based NWB visualization and DANDI exploration
      TypeScript
      •
      Apache License 2.0
      •13•60•43•1•Updated Sep 18, 2025Sep 18, 2025

    • adapol

      Public
      Adaptive Pole Fitting for Quantum Many-Body Physics
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•11•0•0•Updated Sep 17, 2025Sep 17, 2025

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      2-photoncalcium-imagingmotion-correctionsource-extractiondeconvolutioncnmf
      Python
      •
      GNU General Public License v2.0
      •387•686•72•11•Updated Sep 17, 2025Sep 17, 2025

    • walnuts

      Public
      Within-orbit Adaptive Leapfrog No-U-Turn Sampler
      samplingstanmcmchmc
      C++
      •
      MIT License
      •0•17•7•3•Updated Sep 15, 2025Sep 15, 2025

    • ManifoldEM

      Public
      Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data
      Python
      •
      GNU General Public License v3.0
      •2•13•5•0•Updated Sep 15, 2025Sep 15, 2025

    • cryoSBI

      Public
      Python
      •2•12•15•2•Updated Sep 15, 2025Sep 15, 2025

    • fi-slurm-utils

      Public
      Command-line utilities for Slurm HPC clusters
      slurmhpc-clusters
      Rust
      •
      Apache License 2.0
      •0•3•1•0•Updated Sep 12, 2025Sep 12, 2025

    • finufft

      Public
      Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
      C++
      •
      Other
      •93•371•45•10•Updated Sep 12, 2025Sep 12, 2025

    • neuroRSE

      Public
      Website for CCN's neuroRSE group
      CSS
      •
      MIT License
      •0•1•0•0•Updated Sep 11, 2025Sep 11, 2025

    • slurm-prometheus-exporter

      Public
      Prometheus exporter for slurm job/node data
      Haskell
      •10•39•5•1•Updated Sep 11, 2025Sep 11, 2025

    • ccq-software-build

      Public
      CCQ software build scripts
      Shell
      •6•12•0•0•Updated Sep 10, 2025Sep 10, 2025

    • jax-finufft

      Public
      JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
      Python
      •
      Apache License 2.0
      •6•100•9•3•Updated Sep 9, 2025Sep 9, 2025

    • dmk

      Public
      A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution
      C++
      •0•7•12•0•Updated Sep 9, 2025Sep 9, 2025

    • CryoLike

      Public
      Python
      •
      MIT License
      •6•9•8•7•Updated Sep 8, 2025Sep 8, 2025

    • nifty-ls

      Public
      A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
      time-serieslomb-scargle-periodogramspectral-analysis
      Python
      •
      Apache License 2.0
      •5•44•4•0•Updated Sep 5, 2025Sep 5, 2025

    • figurl

      Public
      Shareable, interactive scientific figures in the cloud
      Python
      •
      Apache License 2.0
      •5•37•2•0•Updated Sep 4, 2025Sep 4, 2025

    • nixpack

      Public
      nix+spack = nixpack (spanix?)
      Nix
      •
      MIT License
      •4•47•1•4•Updated Sep 4, 2025Sep 4, 2025

    • spack

      Public
      A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
      Python
      •
      Other
      •2.4k•2•0•12•Updated Sep 4, 2025Sep 4, 2025

    • disBatch

      Public
      Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.
      distributed-computingbatch-processing
      Python
      •
      Apache License 2.0
      •9•46•7•0•Updated Sep 4, 2025Sep 4, 2025

    • pytorch-finufft

      Public
      Pytorch wrappers for the FINUFFT library
      Python
      •
      MIT License
      •0•14•6•3•Updated Sep 4, 2025Sep 4, 2025

    • cephdu

      Public
      A ncdu-like TUI for the Ceph File System, using xattrs instead of crawling
      cephdisk-usagencdu
      Rust
      •
      MIT License
      •0•2•10•0•Updated Sep 3, 2025Sep 3, 2025

    • baobzi

      Public
      An adaptive fast function approximator based on tree search
      pythonccmakecppfortranjuliamatlabeigenapproximationmsgpack
      C++
      •
      Apache License 2.0
      •4•16•13•0•Updated Sep 3, 2025Sep 3, 2025

    • clair

      Public
      Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ
      C++
      •
      Apache License 2.0
      •3•16•3•1•Updated Aug 30, 2025Aug 30, 2025

    • c2py

      Public
      Clair/c2py low level library
      C++
      •
      Apache License 2.0
      •1•1•0•0•Updated Aug 30, 2025Aug 30, 2025

    • flathub

      Public
      A simple elasticsearch frontend for serving astrophysical simulation catalog data
      Haskell
      •
      Apache License 2.0
      •8•10•14•0•Updated Aug 29, 2025Aug 29, 2025

    • binderhub

      Public
      Deterministically build docker images from a git repository + commit
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •398•2•2•0•Updated Aug 27, 2025Aug 27, 2025

    • scc-viswall-prom

      Public
      Generates plots of cluster usage data for the Flatiron viswall by scraping Prometheus
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 27, 2025Aug 27, 2025