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@danforthcenter Donald Danforth Plant Science Center

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    108 repositories

    • plantcv-extras

      Public
      An add-on package for PlantCV with extra tools
      Python
      •
      Mozilla Public License 2.0
      •0•0•3•1•Updated Dec 3, 2024Dec 3, 2024

    • plantcv-geospatial

      Public
      Geospatial add-on package to PlantCV
      Python
      •
      Mozilla Public License 2.0
      •1•1•6•5•Updated Dec 3, 2024Dec 3, 2024

    • plantcv

      Public
      Plant phenotyping with image analysis
      sciencebioinformaticsimage-analysisplant-phenotypingplantcv
      Python
      •
      Mozilla Public License 2.0
      •265•667•87•17•Updated Dec 3, 2024Dec 3, 2024

    • syncomBuildR

      Public
      R
      •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

    • pcvr

      Public
      R functions for use with plantCV output
      R
      •0•4•0•0•Updated Nov 26, 2024Nov 26, 2024

    • plantcv-tutorial-watershed

      Public
      watershed tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 17, 2024Nov 17, 2024

    • plantcv-tutorial-seeds

      Public
      seed workflow tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Nov 17, 2024Nov 17, 2024

    • plantcv-tutorial-arabidopsis-tray

      Public
      Tutorial for analyzing top-down trays of plants with PlantCV
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • plantcv-tutorial-v4-multiobject

      Public
      Tutorial for analyzing multiple plants, leaves, or objects using PlantCV v4.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•2•Updated Nov 15, 2024Nov 15, 2024

    • plantcv-tutorial-morphology

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-annotate

      Public
      add-on package for PlantCV annotation tools
      Python
      •
      Mozilla Public License 2.0
      •0•1•5•5•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-tutorial-germination

      Public
      Notebook for performing germination studies using plantCV
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•2•0•0•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-tutorial-pollen-germination

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • plantcv-stomata-tutorial-pcv4

      Public
      Tutorial for analyzing microscopy images of stomata using PlantCV version 4.0
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-tutorial-thermal

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-tutorial-color-correction

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-tutorial-input-output

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • plantcv-homology-tutorials

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-hyperspectral-smf-detection

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-machine-learning

      Public
      Tutorial for analyzing image data using machine learning tools from PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-grayscale

      Public
      Tutorial for analyzing grayscale image data using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-kmeans-clustering

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • napari_naive_bayes_tutorial

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-photosynthesis-multi

      Public
      Tutorial for using PlantCV for analysis of photosynthesis images that contain multiple objects (such as multiple plants or leaves).
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-simple-rgb-workflow

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-v4-VIS-single-plant

      Public
      PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysis
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•4•0•1•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-vis-nir

      Public
      plantcv-tutorial-vis-nir
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•1•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-template

      Public
      A template for new PlantCV tutorial repositories
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•2•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-camera-calibration

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•1•Updated Nov 12, 2024Nov 12, 2024

    • plantcv-tutorial-photosynthesis

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024