Repositories list

• upptime

  Public
  CNS Services Uptime Monitor

  Markdown

  •

  MIT License

  •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

• scimaps

  Public
  SciMaps website

  TypeScript

  •0•2•2•0•Updated Aug 19, 2025Aug 19, 2025

• dvl-llm

  Public
  Data Visualization Literacy Framework + LLMs

  Jupyter Notebook

  •1•0•3•0•Updated Aug 19, 2025Aug 19, 2025

• hra-kg-supporting-information

  Public
  Supporting Information for “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data”

  Jupyter Notebook

  •0•0•2•0•Updated Aug 15, 2025Aug 15, 2025

• hra-cell-type-populations-supporting-information

  Public
  Supporting information page for the HRApop paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •1•0•9•0•Updated Aug 14, 2025Aug 14, 2025

• hra-pop-notebooks

  Public
  A repo for code to visualize HRApop data for analysis and validation

  Jupyter Notebook

  •1•0•1•0•Updated Aug 14, 2025Aug 14, 2025

• hra-butterfly

  Public
  HRA Butterfly Visualization

  Jupyter Notebook

  •3•0•0•0•Updated Aug 13, 2025Aug 13, 2025

• ctann-data-descriptor

  Public
  Supporting Information for "Constructing, Validating, and Using Human Reference Atlas Crosswalks"

  0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

• hra-amap

  Public
  HRA-AMAP: Bidirectional Projections Between Human Atlas Systems for Data and Code Interoperability

  human-reference-atlas

  Jupyter Notebook

  •

  MIT License

  •2•1•11•0•Updated Aug 8, 2025Aug 8, 2025

• macroscope-kiosk

  Public
  The Macroscope Kiosk is an application to access macroscopes from the Places & Spaces: Mapping Science exhibit

  TypeScript

  •

  MIT License

  •1•0•3•3•Updated Aug 6, 2025Aug 6, 2025

• hra-cell-distance-analysis

  Public
  Cell Distance Analysis for Spatial Omics Datasets, primarily focused on vascular cells.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

• cns-humanexus-2.0

  Public
  A Unity project for Humanexus 2.0

  C#

  •0•0•1•0•Updated Jul 29, 2025Jul 29, 2025

• data-vis-xr-panel-2025

  Public
  Panel website for the IEEE VIS 2025 panel entitled "TALK, TRY, TELL: Challenges and Opportunities for Theory-Grounded Data Visualization in Extended Reality"

  0•0•0•0•Updated Jul 25, 2025Jul 25, 2025

• cns-nrt-evaluation-supporting-information

  Public
  Supporting information and data for the 2024 evaluation of the Complex Networks & Systems NSF Research Trainneeship (CNS NRT) program.

  TeX

  •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

• hra-kg-notebooks

  Public
  Documentation for accessing HRA KG data

  Jupyter Notebook

  •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

• ndjsonld

  Public
  A CLI for running jsonld commands over ndjson (newline-delimited json) files

  JavaScript

  •

  MIT License

  •0•1•0•0•Updated Jul 3, 2025Jul 3, 2025

• hra-ftu-rag-supporting-information

  Public
  Supporting information page for "AI-Driven Functional Tissue Unit Characteristics Discovery for the Human Reference Atlas"

  MIT License

  •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

• dvl-llm-supporting-information

  Public
  Supporting Information for the DVL LLM paper (change to paper title)

  1•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• onto-llm-mapping

  Public
  [WIP] ontology mapping using LLMs and RAG

  R

  •

  MIT License

  •1•9•2•0•Updated Jun 30, 2025Jun 30, 2025

• hra-ftu-vccf-supporting-information

  Public
  Supporting information page for the "Function Tissue Units in the Human Reference Atlas" paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •3•2•0•0•Updated Jun 18, 2025Jun 18, 2025

• hra-2d-ftu-processor

  Public
  Library to do various tasks with 2D FTU DOs

  MIT License

  •0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• hra-fibi-images

  Public
  Shell

  •

  MIT License

  •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

• hra-glb-preprocessor

  Public
  Make meshes manifold and filling holes. Generate OFF file for a single mesh from GLB

  Python

  •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• hra-3d-cell-generation-api

  Public
  API to generate 3D Cells inside Anatomical Structures

  human-reference-atlas

  C++

  •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• hra-glb-download

  Public
  Download HRA 3D Reference Organ GLB files

  human-reference-atlas

  Python

  •0•0•0•0•Updated Jun 6, 2025Jun 6, 2025

• hra-organ-gallery-supporting-information

  Public
  Supporting Information for "Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas"

  human-reference-atlassupporting-information

  0•0•0•0•Updated Jun 2, 2025Jun 2, 2025

• cns-unity-ai-vr

  Public
  Code for VR-AI-ment, a prototype to study embodiments of AI in VR spaces

  Mathematica

  •0•0•3•0•Updated Jun 1, 2025Jun 1, 2025

• hra-vccf-cell-distance-visualizations

  Public
  HRA VCCF cell distance visualizations extended to other organs, based on work on skin data.

  human-reference-atlas

  HTML

  •

  MIT License

  •1•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• hra-node-dist-vis

  Public
  HRA Node Distance Visualization Web Component

  human-reference-atlas

  JavaScript

  •

  MIT License

  •0•2•0•0•Updated Apr 15, 2025Apr 15, 2025

• hra-ftu-explorer-supporting-information

  Public
  Supporting information page for the FTU Explorer paper (in progress)

  human-reference-atlassupporting-information

  Jupyter Notebook

  •0•0•2•0•Updated Apr 9, 2025Apr 9, 2025