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    48 repositories

    • g2gtools

      Public
      Personal diploid genome creation and coordinate conversion
      Python
      •9•21•9•1•Updated Sep 25, 2024Sep 25, 2024

    • gbrs

      Public
      Genotype-free genome reconstruction and ASE quantification
      Python
      •
      MIT License
      •3•8•2•3•Updated Sep 19, 2024Sep 19, 2024

    • intermediate

      Public
      small R utility for mediation analysis
      R
      •13•5•0•1•Updated Aug 5, 2024Aug 5, 2024

    • qtl2web

      Public
      HTML
      •
      MIT License
      •0•0•0•4•Updated May 21, 2024May 21, 2024

    • qtl2api

      Public
      Wrapper around rqtl/qtl2
      R
      •
      Other
      •0•0•0•0•Updated Apr 13, 2024Apr 13, 2024

    • qtl2rest

      Public
      Docker container for qtl2api R library.
      R
      •0•0•0•0•Updated Apr 13, 2024Apr 13, 2024

    • simplerestrserve

      Public
      A very simple Docker image for RestRserve
      R
      •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • ensimplR

      Public
      R
      •0•1•0•0•Updated Jan 30, 2024Jan 30, 2024

    • emase

      Public
      Expectation-Maximization algorithm for Allele-Specific Expression
      Python
      •
      GNU General Public License v3.0
      •13•22•5•1•Updated May 9, 2023May 9, 2023

    • alntools

      Public
      Preprocess bam file into a compressed alignment incidence matrix (equivalence class)
      Python
      •
      MIT License
      •1•2•5•3•Updated Apr 22, 2023Apr 22, 2023

    • ensimpl

      Public
      Simple API into Ensembl
      Python
      •1•0•0•2•Updated Feb 14, 2023Feb 14, 2023

    • emase-zero

      Public
      C++ Implementation of EMASE
      expressionexpectation-maximization-algorithmallele-specificallele-specific-expression
      C++
      •
      MIT License
      •2•6•2•1•Updated Jan 17, 2023Jan 17, 2023

    • scBASE

      Public
      A set of tools for accurate quantitation of single-cell allele-specific expression
      Python
      •
      MIT License
      •1•12•3•2•Updated Dec 26, 2022Dec 26, 2022

    • qtlapi

      Public
      R
      •0•4•0•0•Updated Dec 1, 2021Dec 1, 2021

    • scRATE

      Public
      Bayesian model selection to detect zero-inflated genes
      R
      •1•8•1•0•Updated Aug 10, 2020Aug 10, 2020

    • ensimplR-old

      Public
      Simple R API into ensimpl data
      R
      •
      MIT License
      •0•2•0•0•Updated Mar 20, 2020Mar 20, 2020

    • DeSNP

      Public
      Tools for the CGD DeSNPing pipeline
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 20, 2019Aug 20, 2019

    • aseQTL

      Public
      Allele-specific expression QTL (aseQTL) package
      R
      •0•1•0•0•Updated Jun 21, 2019Jun 21, 2019

    • svensonDO850-analysis

      Public
      A collection of scripts for analyzing the Svenson DO850 data
      R
      •0•0•0•0•Updated May 10, 2019May 10, 2019

    • mouse_map_converter

      Public
      HTML
      •0•0•0•0•Updated Jan 2, 2019Jan 2, 2019

    • ImageEchelon

      Public
      Tool to quantify images where meaningful differences are discernible by eye, but difficult to quantify using traditional methods.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 15, 2018Oct 15, 2018

    • cc_proteins

      Public
      CC Protein Viewer. THERE IS CURRENTLY NO DOCUMENTATION.
      HTML
      •0•0•0•0•Updated Sep 27, 2018Sep 27, 2018

    • qtl2tricks

      Public
      R
      •1•1•0•0•Updated Jul 25, 2018Jul 25, 2018

    • msbwt

      Public
      A python toolkit for building and querying multi-string BWTs
      Python
      •
      MIT License
      •7•0•0•0•Updated Jun 21, 2018Jun 21, 2018

    • how-to-guide

      Public
      A how-to guide to the Churchill Lab, The Jackson Laboratory, and Bar Harbor.
      1•1•0•0•Updated Jun 5, 2018Jun 5, 2018

    • test

      Public
      0•0•0•0•Updated May 23, 2018May 23, 2018

    • qtl-viewer

      Public archive
      HTML
      •0•0•0•1•Updated Apr 17, 2018Apr 17, 2018

    • Utilities

      Public
      R code to share among the group.
      R
      •2•1•0•0•Updated Mar 9, 2018Mar 9, 2018

    • ensimpl_snps

      Public
      Python
      •0•0•0•0•Updated Jan 31, 2018Jan 31, 2018

    • AttieMetabolomics

      Public
      Code for the Attie lab metabolite and lipid data
      R
      •3•0•0•0•Updated Jan 12, 2018Jan 12, 2018