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    18 repositories

    • NNSim

      Public
      Roff
      •
      MIT License
      •1•0•1•0•Updated Aug 29, 2024Aug 29, 2024

    • cycpeptmp

      Public
      Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides
      bioinformaticsdeep-learningpermeabilitycyclic-peptides
      Python
      •
      MIT License
      •1•8•0•0•Updated Aug 21, 2024Aug 21, 2024

    • restretto

      Public
      REstretto (REuse of sub-STRuctures as an Effective Technique for protein-ligand docking TOol): An virtual screening-oriented protein-ligand docking tool with reuse of fragments
      C++
      •
      MIT License
      •3•7•9•1•Updated Jul 25, 2024Jul 25, 2024

    • fragpair-prescreening

      Public
      C++
      •
      MIT License
      •0•0•0•0•Updated Jun 5, 2024Jun 5, 2024

    • MEGADOCK

      Public
      An ultra-high-performance protein-protein docking for heterogeneous supercomputers
      cudaprotein-protein-interactionbioinformaticsgpufftw
      C++
      •
      Other
      •32•48•3•0•Updated Dec 10, 2023Dec 10, 2023

    • cycpeptppb

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•0•Updated May 17, 2023May 17, 2023

    • kmer-table

      Public
      JavaScript
      •0•0•0•0•Updated Feb 24, 2022Feb 24, 2022

    • exprorer

      Public
      EXPRORER: Rational cosolvents set construction method for cosolvent molecular dynamics (CMD) with large-scale computation
      C++
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Feb 3, 2022Feb 3, 2022

    • NRLMFb

      Public
      NRLMFβ: Bata-distribution-rescored Neighborhood Regularized Logistic Matrix Factorization for Improving Performance of Drug–Target Interaction Prediction
      Python
      •
      GNU General Public License v2.0
      •1•11•0•0•Updated Oct 12, 2021Oct 12, 2021

    • tsss

      Public
      Homology search software based on two-step seed search strategy
      C++
      •
      MIT License
      •0•0•0•0•Updated Oct 12, 2021Oct 12, 2021

    • mpidp

      Public
      A task processing framework implemented in C++ using MPI library
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 15, 2020Jan 15, 2020

    • megadock_hpccm

      Public
      MEGADOCK with HPC-Container-Maker
      C++
      •1•1•0•0•Updated Dec 24, 2019Dec 24, 2019

    • SPDRank

      Public
      Learning-to-Rank Technique based on Ignoring Meaningless Ranking Orders between Compounds
      Python
      •
      MIT License
      •2•3•0•0•Updated Aug 6, 2019Aug 6, 2019

    • GMpipeline

      Public
      Python
      •0•1•0•0•Updated Mar 25, 2019Mar 25, 2019

    • PAPPION

      Public
      PAPPION: Fast and Accurate Protein-Protein Interaction Predictions by Structural Profiling and Stacking
      Python
      •0•1•0•0•Updated Mar 23, 2019Mar 23, 2019

    • BO-DTI

      Public
      Scripts for "Efficient Hyperparameter Optimization by Using Bayesian Optimization for Drug-Target Interaction Prediction"
      Python
      •
      GNU General Public License v3.0
      •3•7•0•0•Updated Feb 8, 2019Feb 8, 2019

    • ghostz

      Public
      GHOSTZ: A high-speed homology search tool to detect remote homologues like BLAST using database subsequence clustering.
      C++
      •
      BSD 2-Clause "Simplified" License
      •2•4•5•1•Updated Oct 16, 2018Oct 16, 2018

    • ghostz-gpu

      Public
      A GPU-accelerated sequence homology search tool using database subsequence clustering
      HTML
      •
      BSD 2-Clause "Simplified" License
      •6•10•1•1•Updated Jul 5, 2018Jul 5, 2018