VIB - Nucleomics Core

All

28 repositories

ChimericSeq
Public
Source code and test reads
Python
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Other
•3•0•0•0•Updated Mar 26, 2025Mar 26, 2025
ngs-tools
Public
Various wrappers and parsers for NGS data analysis
ngs
Shell
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Other
•1•3•0•0•Updated Mar 26, 2025Mar 26, 2025
admin-tools
Public
sysadmin tasks made easier
picard gatk samtools filesender-cmd
Shell
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Other
•0•4•0•0•Updated Mar 12, 2025Mar 12, 2025
Kinnex_16S_decat_demux_bash
Public
process raw 16S Kinnex data to fastq
Shell
•0•0•0•0•Updated Mar 10, 2025Mar 10, 2025
benchmarks
Public
benchmarks for relevant bio-apps and/or workflows
HTML
•
GNU General Public License v3.0
•0•0•0•0•Updated Mar 5, 2025Mar 5, 2025
NC_HiFi-16S-workflow
Public
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
Nextflow
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BSD 3-Clause Clear License
•18•0•0•0•Updated Mar 4, 2025Mar 4, 2025
pacbio-tools
Public
Tools for PacBio Sequel data analysis
pacbio sequel
Shell
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Other
•4•8•0•0•Updated Feb 25, 2025Feb 25, 2025
variant_analysis
Public
basic scripts to perform small variant analysis on a server
Shell
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GNU General Public License v3.0
•0•0•0•0•Updated Feb 5, 2025Feb 5, 2025
aviti-tools
Public
scripts and code for the Aviti data
Shell
•0•1•0•0•Updated Feb 5, 2025Feb 5, 2025
Shiny-apps
Public
rstudio shiny-apps shinyapp
R
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Other
•0•1•0•0•Updated Dec 12, 2024Dec 12, 2024
NC_cloud-dl
Public
Bash script to manage files from nextcloud
Shell
•10•0•0•0•Updated Jul 2, 2024Jul 2, 2024
BRBseq-tools
Public
HTML
•0•0•0•0•Updated Feb 23, 2024Feb 23, 2024
nanopore-tools
Public
Scripts and utilities to process ONT data (MinION)
nanopore
Shell
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Other
•0•4•0•0•Updated Jan 9, 2024Jan 9, 2024
plotting-tools
Public
Shareable code produced at the Core upon request or to support data re-analysis
plots
R
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Other
•0•0•0•0•Updated Jul 14, 2023Jul 14, 2023
mgi-tools
Public
Perl
•0•0•0•0•Updated Jun 9, 2023Jun 9, 2023
GPT_templates
Public
GNU General Public License v3.0
•0•0•0•0•Updated Apr 2, 2023Apr 2, 2023
Rmd-report_template
Public
example code
TeX
•0•0•0•0•Updated Mar 10, 2023Mar 10, 2023
16S_analysis_pipeline
Public
Building a pipeline for automated 16S analysis from paired short-reads or long-reads
pipeline-framework amplicon-sequencing 16s-rrna metagenomics-data
HTML
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 5, 2023Jan 5, 2023
pb-16S-nf_tutorial
Public
Pacbio 16S data analysis with pb-16S-nf
HTML
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Other
•0•0•0•0•Updated Jan 5, 2023Jan 5, 2023
Opentrons
Public
protocols and utilities for the Opentrons robots
Python
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Other
•0•0•0•0•Updated Dec 7, 2022Dec 7, 2022
InSilico_PCR
Public
extract long read subsequences from a pair of primers
amplicon insilico-pcr bbmap-msa
Shell
•1•5•0•0•Updated Feb 11, 2022Feb 11, 2022
cloud-dl
Public
Bash script to manage files from nextcloud
cli nextcloud
Shell
•10•1•0•0•Updated May 18, 2021May 18, 2021
mplotter
Public
Creates publication quality dot plot using ggplot
Shell
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GNU General Public License v3.0
•3•1•0•0•Updated Mar 25, 2020Mar 25, 2020
Nanopore_Pinfish_Analysis
Public
Customised reporting of ONT pinfish analysis results
r-markdown oxford-nanopore pinfish snakemake
HTML
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Mozilla Public License 2.0
•0•1•0•0•Updated Sep 9, 2019Sep 9, 2019
nanopore-tools_wiki
Public
HTML
•0•0•0•0•Updated Aug 19, 2019Aug 19, 2019
genepattern-tools
Public
scripts and wrappers for GenePattern Modules
Perl
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Other
•0•0•0•0•Updated Jan 11, 2019Jan 11, 2019
bionano-tools
Public
Custom tools to 'facilitate' BioNano Genomics data analysis
Perl
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Other
•6•33•0•0•Updated Oct 22, 2018Oct 22, 2018
circos-tools
Public
Shell
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Other
•0•0•0•0•Updated Feb 16, 2018Feb 16, 2018